AMCG00011873


Basic Information

Item Value
gene id AMCG00011873
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6084852 ~ 6102011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011873
ATGGGCTCTGCTTTCTCTCAGTCATTGTCCAGGTCTCTGGATGCTCACAGCCTGCCTGAGCGACTGTCCCAGAGAGagaacacccccacccccactgcaGCACAGAACCTCCGTCCCCCGAGTCTCTGTCTGAGAGGAGCAGGAGAGAGCAGCCTGGTGGACCCATCTGAAGCCCCCAGGAGCAGCGAGGAGACGCAGAGAGCAGAGCAGACGAGCACCAGGCAGCCCCCACTGACCATGAACAACTCAAACACCACAGGACTGGACACAGACTCTCAGGACAATTTAGAATACTCACgcaatgcatttatatttataattgtaatgaGAATTTTAAACGTGGTCATCGGGCTGCCGGCCAACTGCCTGGCCATCTGCAGCCTGTACCGCATGATCAGGGCTGACATGGTGGTACCCATCTACATCATCAACCTGCTCATCTCCGACCTCCTGCAGATCATCGCGAGAATAGTCCGGTTAATCTTactcacacttacacacagtgAGAGATTACAGGTTGCTAAGGCTTTTTCTTTCAGTCTCTTTATCTTAGGCCTGAGTGCCAGCATTGGGTTCATGCTGTGCATCGCCCTGGAGAGATACCTGGTGGTCGCCCATCCTCTGTGGTACCGGTGCCGCCGCAGCATCAGGCACACCACACTGGTCTCTGTGGGAGTGTGGGTGTCGGTTGTGATACTTACTGCAGTGGTGATGCCACTATATTTTATGCCACATTTTCAACAACAAATAACTATAAGTTTCTCTGTGCTCTTCCTCCTGCCGTTCCCACttctcttgttcttcttcttcggCACATGGAGAGCCATCGCCGGCGCCACCTCTGTACGAGAcgaggagaagaggaggattGTGCGCACGCTGGCCCTCGTCCTGGGCACCTACACTGTGCTCTTCCTCCCATACTGCATAGTGACTTTTATTATAAGCTATAAgataaaaagaaataacaatattGCCTTAATCATTACAATTCAAATGGTGCAACTCAGTGCCCTTGTGGACCCAGTTCTGTACATCCTCCTCAGGCCTGATGTCAGGAACACACTGGGCTCTCTCCCCTGCTGTCAGAGGCTGTTCACACTgaccaactgctggacacccaGAGCTGAGCAGGAGACAGAGGATACAGACACTGTGTCTCCTACTGAAACTAGCGTCTGA
>TU167040
gcagaccagactgcactgaccctctctctctctctctctagtggACAACGGTGATCTCCAGTCATTGTCCAGGTCTCTGGATGCTCACAGCCTGCCTGAGCGACTGTCCCAGAGAGagaacacccccacccccactgcaGCACAGAACCTCCGTCCCCCGAGTCTCTGTCTGAGAGGAGCAGGAGAGAGCAGCCTGGTGGACCCATCTGAAGCCCCCAGGAGCAGCGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011873 True 1182 mRNA 0.52 1 6100830 6102011
TU167040 False 230 lncRNA 0.61 2 6084852 6101019

Neighbor

gene id symbol gene type direction distance location
AMCG00011865 NA coding upstream 30847 6053574 ~ 6054005 (+)
AMCG00011863 NA coding upstream 33999 6030099 ~ 6050853 (+)
AMCG00011861 NA coding upstream 63156 6018215 ~ 6021696 (+)
AMCG00011864 NA coding upstream 71742 6003677 ~ 6013110 (+)
AMCG00011862 LOC107565973 coding upstream 89197 5987777 ~ 5995655 (+)
AMCG00011872 NA coding downstream 45621 6147632 ~ 6148597 (+)
AMCG00011874 NA coding downstream 68058 6170069 ~ 6170866 (+)
AMCG00011875 NA coding downstream 139979 6241990 ~ 6243488 (+)
AMCG00011890 NA coding downstream 218991 6321002 ~ 6329996 (+)
AMCG00011891 NA coding downstream 230440 6332451 ~ 6347406 (+)
G133145 NA non-coding upstream 7467 6067574 ~ 6077385 (+)
G133129 NA non-coding upstream 48866 5992317 ~ 6035986 (+)
G133115 NA non-coding upstream 77264 5932822 ~ 6007588 (+)
G133132 NA non-coding upstream 85621 5998609 ~ 5999231 (+)
G133108 NA non-coding upstream 182049 5901703 ~ 5902803 (+)
G133248 NA non-coding downstream 122295 6224306 ~ 6224519 (+)
G133264 NA non-coding downstream 220755 6322766 ~ 6347706 (+)
G133350 NA non-coding downstream 464848 6566859 ~ 6578010 (+)
G133354 NA non-coding downstream 487405 6589416 ~ 6589658 (+)
G133440 NA non-coding downstream 574505 6676516 ~ 6717923 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 177678 5893524 ~ 5907174 (+)
AMCG00011837 NA other upstream 195968 5886917 ~ 5888884 (+)
G133059 NA other upstream 255320 5828801 ~ 5829532 (+)
AMCG00011830 vmhcl,LOC107560354 other upstream 323604 5759858 ~ 5761248 (+)
AMCG00011806 NA other upstream 964754 5115090 ~ 5120098 (+)
AMCG00011876 NA other downstream 153939 6255950 ~ 6260389 (+)
G133327 NA other downstream 381936 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 443377 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 542865 6644876 ~ 6653731 (+)
AMCG00011948 NA other downstream 1033857 7135868 ~ 7140132 (+)

Expression


Co-expression Network