G133350


Basic Information

Item Value
gene id G133350
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6566859 ~ 6578010 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU167234
gttaatgtgctgtagtgttcagtgtgtctgtattaaccctctctctctcagtgcagtgttaatgtgctgtagtgttcagtcagtgtctgtattaaccctctctctctcagtgcagtgttaatgtgctgtagtgttcagtcagtgtgtctgtattaaccctctctctctctgtctctctctctctatctatctctcctCAGGGTGACCCTGGGGAATCAGTTGGATGGGATCCACCTGCTGGACCCGGACGTTGTGTCTCGTTTCAAGAAGAGATACCCAGACGGAGTGATCTCCAAGCCCAAGAACATGTAGACCAGGGGGGCAgatttcaaaatgtgaaaatgttcaatatgTCTGAACTGAGCGATTGTATCATTACCGGAGTGACTGGGATCTCCTGTAGGAGCACAAACTAGCAGACACTGCGTCCCCCCGGACTGGAGGCTGACGGTCTTGATGACGAGGGAGAGACGAGTCTGGCTGAGACTGAGACGTGACTGAGTggccctgacacactgactgactgacacacacaggaacacggactgagacacacagactgactggctgacacaCTGCTGGCCATGCTGAGATGAGGACAGGACTCTGGACTGCAGAGATTCTCTGTTCCACtttttatacatgtttgttaaaaaagcaaaaata

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU167234 True 666 lncRNA 0.49 3 6566859 6578010

Neighbor

gene id symbol gene type direction distance location
AMCG00011910 NA coding upstream 3044 6562099 ~ 6563815 (+)
AMCG00011908 LOC106600235 coding upstream 35823 6526859 ~ 6531036 (+)
AMCG00011906 NA coding upstream 63184 6502809 ~ 6503675 (+)
AMCG00011897 ajuba,LOC107753931,LOC107588152,LOC107668830 coding upstream 88654 6473151 ~ 6478205 (+)
AMCG00011898 NA coding upstream 106150 6449205 ~ 6460709 (+)
AMCG00011922 NA coding downstream 61712 6639722 ~ 6640333 (+)
AMCG00011932 NA coding downstream 123903 6701913 ~ 6706375 (+)
AMCG00011923 NA coding downstream 197695 6775705 ~ 6780766 (+)
AMCG00011938 NA coding downstream 243663 6821673 ~ 6823491 (+)
AMCG00011933 NA coding downstream 281864 6859874 ~ 6862669 (+)
G133264 NA non-coding upstream 219153 6322766 ~ 6347706 (+)
G133248 NA non-coding upstream 342340 6224306 ~ 6224519 (+)
G133145 NA non-coding upstream 489474 6067574 ~ 6077385 (+)
G133129 NA non-coding upstream 530873 5992317 ~ 6035986 (+)
G133115 NA non-coding upstream 559271 5932822 ~ 6007588 (+)
G133354 NA non-coding downstream 11406 6589416 ~ 6589658 (+)
G133440 NA non-coding downstream 98506 6676516 ~ 6717923 (+)
G133465 NA non-coding downstream 156222 6734232 ~ 6734963 (+)
G133491 NA non-coding downstream 171649 6749659 ~ 6750920 (+)
G133508 NA non-coding downstream 202774 6780784 ~ 6781572 (+)
AMCG00011909 ccnb1ip1 other upstream 6197 6545388 ~ 6560662 (+)
G133327 NA other upstream 77651 6483947 ~ 6489208 (+)
AMCG00011876 NA other upstream 306470 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 464848 6084852 ~ 6102011 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 659685 5893524 ~ 5907174 (+)
AMCG00011917 NA other downstream 66866 6644876 ~ 6653731 (+)
AMCG00011948 NA other downstream 557858 7135868 ~ 7140132 (+)
G133619 NA other downstream 658931 7236941 ~ 7242300 (+)
G133667 NA other downstream 927072 7505082 ~ 7508751 (+)
AMCG00011971 NA other downstream 981653 7559663 ~ 7575192 (+)

Expression


Co-expression Network