AMCG00011971


Basic Information

Item Value
gene id AMCG00011971
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7559663 ~ 7575192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011971
ATGGAGTTGGATGATGGGGTGGCCCATGGCAAGCTGGAGGTGTGCCGCGATTTCCTGCGTTGCTACGCACTCGTCCTGTCCCATTGGCCGGCGCTATTTATCCAGCAAGCTCTCAATGAACCTGAGGGCTACACTGCCCATGTCTGGGCCCAAGGCATTGTGGGAAGGGAGACGGGCTCCGTGCGCTTGCTGAGATGGCTGAAAAAGCCACACAAAATCCAAAAGAAGGCCACAAGAGGTGTTTCGGGTAACTTGTCTTGTGATTGGTCACTGTCACAGGAAGTGAGGTCACTGATGAGCACCTGCGAAGGCATCTCAGGGTGCGTGTTCCTGCGAGACGGGCTTCTGGGCTCCACCTCCTTCGATGGGCAGATAGAAGTGTGGGCAGTGCCAAAGGGCAGCCGGGCCGCCACCCTGAACAACCCCTGCCCTTTGAACTGTGTGACCTTTCCCCCTGAGGGTCATTTGGTGGTGGCAGGTGGCTGGGACAAGGCGaCTCTATCAGGTCATGAGGTGTCTGTCCGCAGCCTGTCCTTCTCTCCGTCTGGGGGGCTCCTGACCTCAGGCTGTCTCTCTGGGGATGTGAGGCTGTGGTCAGCACCAACCTGGAAATGTGTAGGGCACTACAGGGCCCACCAGGGGGCAACAGAGGTGCTGCAGTTCATGGAGGGAGGCAGGCTCCTGCTGAGCGGTGGCTCGGACAACATGGTGCATCTGTGGTCTGGGAGTTTGGGTCTCTCTATCGGCCAGCTGGGGGACAGCATGGAACGGTCTGCAGCATCCCAGGGGCAGGGGTCCGGCCGCTCGGCAATGGTGGAATCTCCCGCCCTGTGCGTGGCGGTCGCTGGCGACTACGTTGCTGTGGGTTACCAAAGCGACGGGATCCACCTGTACCATCGGGATTCGGGTAGGTCTTTCTCCTGGCATCAGCGTCGGGTGAGCTGCTCCAATGACTGCCTGGTGCGAGTGTGGGACCCTGCATCTGGCCAGTGCTTCAGGGAGTTTATGGGGCAGGACTCCCCCCTGAACTCAGTGTGCAGTCTGGGTGAATATGTGCTGGTGGGCTCGGGCAGCGGGGAGCTTGCAGTGTGGCAGTGGGAATCGAGAGTGGAAGTCACCCGGATCCCAGCTCACTCAGCCAGGATACACCACTGCACTGCCTACTGGCACTCTGGTAAACATTCGCCAAAGAGGGTGCTAAATGGTGAGATCCAGAGCCAGGACACCAAGCCTGAAGACCTTGCTGTTGCCACAGTATCTGATGATGGGACGGTGCAGCTGTGGCTCCCCCTGCAGGTGGAGAACTGTGGCTCACTGTCGGACCACAGCGGAGTGATACGCGGCTCAGCTCCCGAGGAAGAAGTACCGGTGTTCCTCACGGTGGCAGAAGATCGCATCATGCGAGCTTGGAGCATCTCCACAACGATGGAAAATTCAGTCTCCAAGAAGGGGGGCACCACGGCTCTGTGCTTCTCCCCCTGCGGGCAGCTGCTGGTGTCTGGGCACGGGCAGGGCCAGCTAAATTCACAGTTCTAA
>TU167659
GCCCACAAGAACAGCATCACGGGATGTGATGTCACCAGCAACAGGAAGAACTTGGCCACAGTGTCCCTGGACTCTAAGCTGAAGGTGTGGGCAGTGCCAAAGGGCAGCCGGGCCGCCACCCTGAACAACCCCTGCCCTTTGAACTGTGTGACCTTTCCCCCTGAGGGTCATTTGGTGGTGGCAGGTGGCTGGGACAAGGCGGTGAGGCTCTGGAACTGGTGACCAGGCAGAGTGTGGCGaCTCTATCAGGTCATGAGGTGTCTGTCCGCAGCCTGTCCTTCTCTCCGTCTGGGGGGCTCCTGACCTCAGGCTGTCTCTCTGGGGATGTGAGGCTGTGGTCAGCACCAACCTGGAAATGTGTAGGGCACTACAGGGCCCACCAGGGGGCAACAGAGGTGCTGCAGTTCATGGAGGGAGGCAGGCTCCTGCTGAGCGGTGGCTCGGACAACATGGTGCATCTGTGGTCTGGGAGTTTGGGTCTCTCTATCGGCCAGCTGGGGGACAGCATGGAACGGTCTGCAGCATCCCAGGGGCAGGGGTCCGGCCGCTCGGCAATGGTGGAATCTCCCGCCCTGTGCGTGGCGGTCGCTGGCGACTACGTTGCTGTGGGTTACCAAAGCGACGGGATCCACCTGTACCATCGGGATTCGGGTAGGTCTGTCAGTGCGTGTATG
>TU167660
cccagaCTCTATCAGGTCATGAGGTGTCTGTCCGCAGCCTGTCCTTCTCTCCGTCTGGGGGGCTCCTGACCTCAGGCTGTCTCTCTGGGGATGTGAGGCTGTGGTCAGCACCAACCTGGAAATGTGTAGGGCACTACAGGGCCCACCAGGGGGCAACAGAGGTGCTGCAGTTCATGGAGGGAGGCAGGCTCCTGCTGAGCGGTGGCTCGGACAACATGGTGCATCTGTGGTCTGGGAGTTTGGGTCTCTCTATCGGCCAGCTGGGGGACAGCATGGAACGGTCTGCAGCATCCCAGGGGCAGGGGTCCGGCCGCTCGGCAATGGTGGAATCTCCCGCCCTGTGCGTGGCGGTCGCTGGCGACTACGTTGCTGTGGGTTACCAAAGCGACGGGATCCACCTGTACCATCGGGATTCGGGAGAGTGACGGTCGGTAAGCGAGGGCCCCGGGGTATCTGTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011971 True 1536 mRNA 0.59 13 7559663 7575192
TU167659 False 674 TUCP 0.61 5 7564808 7566028
TU167660 False 460 TUCP 0.63 4 7565387 7566346

Neighbor

gene id symbol gene type direction distance location
AMCG00011960 NA coding upstream 78033 7471715 ~ 7481630 (+)
AMCG00011961 NA coding upstream 107992 7441388 ~ 7451671 (+)
AMCG00011962 NA coding upstream 175693 7382975 ~ 7383970 (+)
AMCG00011963 NA coding upstream 186128 7371184 ~ 7373535 (+)
AMCG00011958 NA coding upstream 198599 7346950 ~ 7361064 (+)
AMCG00011968 NA coding downstream 2164 7577356 ~ 7578348 (+)
AMCG00011972 NA coding downstream 24316 7599508 ~ 7683253 (+)
AMCG00011977 NA coding downstream 119821 7695013 ~ 7754715 (+)
AMCG00011976 NA coding downstream 204034 7779226 ~ 7782991 (+)
AMCG00011975 NA coding downstream 210658 7785850 ~ 7788725 (+)
G133681 NA non-coding upstream 2951 7545283 ~ 7556712 (+)
G133682 NA non-coding upstream 11908 7546644 ~ 7547755 (+)
G133669 NA non-coding upstream 40369 7509749 ~ 7519294 (+)
G133642 NA non-coding upstream 204698 7354370 ~ 7354965 (+)
G133617 NA non-coding upstream 345201 7214235 ~ 7214462 (+)
G133783 NA non-coding downstream 255372 7830564 ~ 7843471 (+)
G133820 NA non-coding downstream 427588 8002780 ~ 8003512 (+)
G133825 NA non-coding downstream 487401 8062593 ~ 8117249 (+)
G133832 NA non-coding downstream 504563 8079755 ~ 8100437 (+)
G133833 NA non-coding downstream 545707 8120899 ~ 8124699 (+)
G133667 NA other upstream 50912 7505082 ~ 7508751 (+)
G133619 NA other upstream 317363 7236941 ~ 7242300 (+)
AMCG00011948 NA other upstream 419531 7135868 ~ 7140132 (+)
AMCG00011917 NA other upstream 905932 6644876 ~ 6653731 (+)
AMCG00011909 ccnb1ip1 other upstream 999001 6545388 ~ 6560662 (+)
AMCG00011987 NA other downstream 349944 7925136 ~ 7928238 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 385506 7960698 ~ 7976097 (+)
AMCG00011993 NA other downstream 452871 8028063 ~ 8037681 (+)
G133822 NA other downstream 476932 8052124 ~ 8055021 (+)
AMCG00012006 NA other downstream 803141 8378333 ~ 8397041 (+)

Expression


Co-expression Network