AMCG00011987


Basic Information

Item Value
gene id AMCG00011987
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7925136 ~ 7928238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011987
ATGcagaaCGGTGCAGCAGGATCAGGCCAGACAGGCAAGGGACAGccccccaccccccgccccaGGACTCGCCTCCTCAATCAGCAGGACCTGGCTTCTGTGCCCTCCACCCTCACCTGGACTGAGGGCTCCGCAGCGGGACTGGTGACCCCGCCGCCGCTCCCCCCAaagcccccccacctccatgGGGGACATCAGTGGGCCGAGACCCTGTCAGCGCCAGGCGGGGCAGGGGGGTGGAGCAGCCAGGGGGAGGAGTCAAtcgagCACACCGAGGGCCTGCAGGAGTGGTGGAGCACAGTGCCGAAGTGGGACGAAATCCCCACTGAGTACCAATGTCtcactgaggaggaggaggccagGTCGGTGTCACTGACGGCGGAGAAGGTACGCAAGGGCCTCCTCCTCTTCCATGAGCTGTTCGTGGACCGCGCAGAATCGCTACGGCAACGCACGGTGGAGCTCCGCTCACTGGCACGGGACCTGGACAAGCTGCACAAGAAGACCCGCATCGCAGGCATCACAGGAGGCACGGCCGGGGCTGTGGGGGGGACGGCGGCGGTGGCGGGCATTATCTTGGCCCCCTTCACCTTTGGCACCTCCCTGCTGGTCACGGCCGCcggggtgggggtggcagtAGCCGGAGGGGCCACCGGAGCCGGGGCGGCCATTACCGACAAGGTCCAGTCCTCTACGGAGAAGAAGAAGGTGGAGCAGTTGGCGCGGGAGTACCAGCAGGACGTGGGCGGCCTGTGCGACTGCCTACGCTTCGTCCACCAGGGGATGCAGCGGCTGCGGAGGAGGGGCGGGGCAGGGAAGGGAGGCGGGAGCTGTAAGGTGTCCCAGATGGCGGAGGAGGAGGTGGCGGGACTGGAACTCCTGGCGGATGCGGCCCTGGTGGCGGGCCAGATCACGGAGGGGATGGCAGGCGATTTGGTGGAGTTCTTCCTGGGCGTGCCCCCGCCTTCCCCCGCAGCCCCCAATGGGCGCAGCTCTAAGAAGGGGATGAAGGGCAAGCAGACCAAGCTGGCCGACACGGTCCGGCAGCTGTGTGACAGGCTGGACGGCAGGCTGTCTGAGCTATGTGCCACCCGTGACCAGCTCGCCCTCTGA
>TU167857
gattgtaggGATGTGTGGCTTCTGTATTCTTGTCAGACTGGTTCCTGTCATCGAGGGGAGAACAAGGCAGACAGAGAGGTGtgagagatagacagatattGATAGACAGAGAGTCAGAcaagttaaaataaagtaaatagtggaagaaaagagagagagaaaggagaaaggaagagggagaggaagaaaaagagggacaaaataaagacggaaagaaaataaaaaattgaaggAAAGACAAGCAAAAGATGAGGAGACAGAAGAACGCATTGTTAGACAGGTTTAGAGACAGAGTCAGTCAGACTGACAGATAAACAGGCAGGAAGTGAAAGggatagacagagacagacagtcagacagaggcacagtgagacacagagacactgtcgGACTCTGGACACAGTCCTGGGCAGCGCTGTGACAGAGGGAGCTGCTCCACCCAGGGACTGAGACAGCCATGcagaaCGGTGCAGCAGGATCAGGCCAGACAGGCAAGGGACAGGTGagtctgagagagacagagcacaGATGCATCCTGTACCGCCTCTCTCGCACGGCACTGAAACTCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011987 True 1113 mRNA 0.68 7 7925593 7928238
TU167857 False 572 lncRNA 0.48 2 7925136 7926226

Neighbor

gene id symbol gene type direction distance location
AMCG00011980 NA coding upstream 40875 7878175 ~ 7884261 (+)
AMCG00011981 NA coding upstream 104744 7816096 ~ 7820392 (+)
AMCG00011979 NA coding upstream 122056 7791013 ~ 7803080 (+)
AMCG00011975 NA coding upstream 136411 7785850 ~ 7788725 (+)
AMCG00011976 NA coding upstream 142145 7779226 ~ 7782991 (+)
AMCG00011985 NA coding downstream 3557 7931795 ~ 7955013 (+)
AMCG00011992 NA coding downstream 70990 7999228 ~ 8016887 (+)
AMCG00011994 NA coding downstream 92566 8020804 ~ 8025061 (+)
AMCG00012005 NA coding downstream 469788 8398026 ~ 8401203 (+)
AMCG00012004 NA coding downstream 497782 8426020 ~ 8428680 (+)
G133783 NA non-coding upstream 81665 7830564 ~ 7843471 (+)
G133665 NA non-coding upstream 349971 7551295 ~ 7575165 (+)
G133681 NA non-coding upstream 368424 7545283 ~ 7556712 (+)
G133682 NA non-coding upstream 377381 7546644 ~ 7547755 (+)
G133669 NA non-coding upstream 405842 7509749 ~ 7519294 (+)
G133820 NA non-coding downstream 74542 8002780 ~ 8003512 (+)
G133825 NA non-coding downstream 134355 8062593 ~ 8117249 (+)
G133832 NA non-coding downstream 151517 8079755 ~ 8100437 (+)
G133833 NA non-coding downstream 192661 8120899 ~ 8124699 (+)
G133921 NA non-coding downstream 268581 8196819 ~ 8197029 (+)
AMCG00011971 NA other upstream 349944 7559663 ~ 7575192 (+)
G133667 NA other upstream 416385 7505082 ~ 7508751 (+)
G133619 NA other upstream 682836 7236941 ~ 7242300 (+)
AMCG00011948 NA other upstream 785004 7135868 ~ 7140132 (+)
AMCG00011917 NA other upstream 1271405 6644876 ~ 6653731 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 32460 7960698 ~ 7976097 (+)
AMCG00011993 NA other downstream 99825 8028063 ~ 8037681 (+)
G133822 NA other downstream 123886 8052124 ~ 8055021 (+)
AMCG00012006 NA other downstream 450095 8378333 ~ 8397041 (+)
AMCG00012008 NA other downstream 581773 8510011 ~ 8520648 (+)

Expression


Co-expression Network