AMCG00011853 (zfhx2,LOC108245441)


Basic Information

Item Value
gene id AMCG00011853
gene name zfhx2,LOC108245441
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5893524 ~ 5907174 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011853
ATGAATGTAGAGGTggagaggaagttcctgtgcagcCCAGACATCCAGACCAAACTCAGCGATCTGGGAGtctctctctctccatcctaCAGGCGGCCCCAGGGCACGGTGTCAGCGGAGGGAAGGCGGGGGAGAcagcccaacacacacacatggCCCGCCGGCACGGAGGTGGCAGAACAGCTGCACTCCCCCGCTGAGACCCCTGCCGCTGACCCACAGTGGAACGGCCCGGCCCCCACCGAAGAAGGAGCTTCCACCGTGTCGCTCGGGAGCCCTACGGCAGAGCCCACCGAGGCCCTTCCTCagactcctcctcctcctcttgaCGTCTCCTCCCAGGAGAGCCCCGCCATCACTCAGACGGCTAGCCAAGATAACgccaagaacaacaacaacaacagcaataacgGTGTTACCCACGGCCAGAAGGGCGCCGGCGCCAGGACCCTCAGCAACCCGGCACTGGACCGCTTCCTGGACCCGGCCCGGCCCTTCAAGTGCAACGCCTGCTTGGAGTCCTTCCCCACCCGCAGCGCCCTCGGGGTGCACTACTCCTCGCAGGGCCACGCCCACCGCATGAAGACAGGCACGGGGGGCGGCGGCGGGGCCGAGGAGGGCGGGGCGGGGGCGGCCTGTGGGCAGCCGAGCTCCGCCACGTCCTTCTCTAGGCCCTTCGTGGCCACCAAGCCCTACCAGTGCGTGCTGTGCCGGGTGTCCTACAACCACGCCTTCTCGCTGGAGAGCCACCTGAAGTCGGTGCTGCACCAGACGCGCTGCCGGGACTTCggcaacagcagtgcccccccccGGCCTGCCACGCACTcgcacaacagcagcaacaacagcagcagcagcagcagcgacaAGGACAGCAACTCGGCCACCGACACCAGCAGCACCCCTGACTCCGCCCCCACCGAAACGACCAAAGACCCCTTCCCGCCCGCCCCTCCTGCTACTGCTGCTTCCTCCTCCGCATCCTCCCTGTCCCCTGCTCTGTCgctcctctcctcttcctcctcctcctcctcctcctcctcttcctcctccccctccccatcccCCGTAGCCTCCGCCCAGGCCGTGTCTGCCTTCCTCACCCTCCTcacctccgcctcctcctcctcaggcACTGCCCTGCCCCCGCACATGGAGCTGATACCccagcagcagctccttctGCCCCTCTTCCTCAATGGACTTGCCCCCACCCCAGACACTCCGTCCGTCTCCCTCCTGGGGCTCAACCCGGCCCAGCAGGCGCTGCTGGCCCAGAGACTGACTTGCACACAGAGCCAGGGGCAGGCAGTAGTACCGAGCCCAGCCGCGGTGCCTCCAGGCTTGGGGGAGAAGCTGGCCGAGCAGGGGGCCGAGAGAGAGGGCGAGGAGAGGGTCCAGCTGAAGGCAGAGAGAGTGGAAGGGATGGTAAtgaaggagggggaggaggagagagagagccagacaGACCTGCCGCCCAAAGAAGAAGAGGATGAACAGAAAGAGGTGATGGACACAGGAGAGGAGAAAAGGAAGATGGGGCTGAAAGTGGAGGAGAGCAATGGAATGGCGGTGGAGGGAGGTCCAGAACCGCACCCTGCTTtgaaaaaggaggaggagggggagagagacggagtgatagagggagagatgatggaggaagaggaggaggagggtcaGGTCCTGACTTTGACTCTGGATGAAgacgacgaggaggaggaggaggaggaggaggaggaggaggaggagggacgGACAGAGTCCCTCACGGTGGCTCCCGCACACGAACTGCCCACCGgcgagcgagagagggagggagtgggggaTGAGGAAGAGACGGAGGGGAGGAAAGTAGGTGGAGAGGGGGAAGCAGACACCCGCACCCCCCAGCCCCAGTCTTCTAGCGACCCCGTCAGACCCTCCCCGTCTCCTAGGGACAACCCCGTCCCAACTCCTGCCAACCAGGAACGTGAtgaagagggggaggaggaggacgaggagggcGCCCTGTCGGAGTTCCAGCACCAGGTGCTCTGGGCCTTCCTGGAGTCCCGCAGTGAGGCAGAGGCCGCCAGCCCCCCCCGGCCCGAGGACTGTGAGGCGCTGGGCAGGGTGGCCGGCCTGGGCGGAGCACAGGTGCGGCGCTGGCTGACCGCCCGGGGCCGAGGGGGAGCGCGGCGTggcacagggagggagggagcgacaGCTGGGGtgaaaggaggagagagggaggagccgGAGGAACCGGCCGCCCCTCGACCCGCCAGCCCCAGCGCCGCTCCCCAGCCCGGACACGGCCGCACAAGACGCCGCCGCTGCCGCCCAGGATCGCCGCACACCATGGAGACTCCAGACCCACAcagaggaggggagagggagagggagagggagagggggagggagagcgCCGAGGAGCCCTGCCTGACCTCGGACTCGGAGATGGAAGGATTGTACACTTCGGTCATCGTGACGGAGGACGAGGACAGCCGGGGCAGCTCTGccagggaggaggagaggagccCGCGCGCCGATGGAgcgagggagggggaggaggagcaggagaaggGGCAGGGCCGCGGCATGGTGTTGCGCTCCGCCACCGTCTTTCTGTCAGAcgcagaggaggaggatgaggatgaggaggaggaggaggagggcggtGGCGAGGGGGAGGGTGGCCGGGAGCGGAGGCGTCGGCGTCACCGGAAGAGGAGGTTGGAGCGAGAGGCAGACGGCGACAGTGAGGGGGAGAGGGCAGACGAGAGCACCAAGAGGCAGCGGCCCGACTGCGACCTGGAGCTGCAGCTGGAGGCCGACCCCCCCGCGCCGCCGCCACCCGTCTCCCATCTGCCGGGGGTTTCTGTGGTGACGCCGGTGGTGCTGGGCCCCGCCCCGCGCCGGCTGCTGCAGCCCCTGCCCCTGTCGCTCTCCCTCGCCCCCTTTGCAGCGCACATCCTGGGGCCCTACCTGCTGCCCCCCCCTGCGCTACCCCTGGGCCTGGGGGGCACCGAGCCAGAGGCGGAcagggagcgagggagaggaAGTGCTGGCGGTGGGGAGGGAGCGGCAGCCTTCCCCAACCCCCCCGTCATCACCCGCTGCTCCGCTGCCCCCTTCCCCGACCCCCTGAACGCACCACCCCCCAGTGCCAGCCGCACCAGCCCCCTGCTTCCCCCTCTGCCCAACGGCGCTGGCTGCGAGGCTCTGGACCTCAGCCTGGGCCGGCACCACAgcccctcttcctcctgctcctcgtcctcctccctgtcctcttcctcctctgcccAGGCGCAGCGTGAGAGGGACCGGGCCCAGCGGGAGCGCCTGCTGGGCGGGGAGCGGCTGTGGGTGGGTGCCGGGGCCCGGGCGGGCGCCGGCCGTGGGGGGGGCTCCGCCGGACTCATTGTAGTGCGGGTCAAGCCCGACGTGCAGCAGAGCAGAACCGGGTCCGGCGAGGCGGTTCCCGAGAGGAGCACCCCCCCTGCCCGTGGCACAGCCAGCACCCTGTACCTACGCGCCGCCGAGCGGGTCAGCGCCATGGgccgggagagggagaggcagagagagagggtgagggagagagagagggaaagggagcgggagagagaccgggagaaggagagagagagggagcgggagagagaggcGTCCCAACGCCACGCGCCGCGGGCCCGGCGGTACCGGGACATGCGGCGCTCACGCACAATAATCCAGAGCGAGCAGCTGGACGTGCTGTACGGCTGCTACTTCAAGGACCCGAACCCGGGAAAGCTGGAGTTCGAGCGCATCGCCGAATGGGTGCAGCTGCCCAAGAAGGTGGTCCAGATCTGGTTCCAGAACATGCGGGCCCGGGAGCGCAAGGGCGAGGTTCGCTTTATCAGCGACGGCACACTGGCGGCCGTGGGCAAGCCACTCATCAAGTTCACCTGGCCCATCAGCCTGCCCATCTTCCAGGGTGGCCCCGCCCCCACGCCGGGCTCCGCCCCCCGGGGTGCCAAGCGAGAGAGGGGCGCCGAGGAGGACAGGGCGGAGGGTGATGAGAAGAGGGCGGCTGCCAGCCCCTCCCTGTCCCGCACCACCAACCCCCGCCCCCTGCTGGCCCGGTTGACCCCTGCCCCTGCCGAGGGCACGGACAGCAAGAAAGCGCCGGCCCCGCCTCGGCCGCCGCCCCACATCCCACCCCTGCCCGCCCCGTCCTACATCTCAAGCACCAAGAGGGCGgcagagagggaagaggagaggCGGGcacaggaggaggaagaggaagaggaggaggaagagacggatgaggaggaggcggaggggaGGAAGCCGGcggtggggcgggggggtgcggcggccagcagcagcagcagcaacaggaTGGTGCCAAAGACCCACACCGCCCCCCCGCCCGCCgtgccctccccctcccccagcctcGCCAAGAGGAACGGGTGGCCGGCGTCAGGGGGCGGCGGAGGGGGAGGAGACTGGGCGCGTTCGGCCACGCCCCGCCCCCACACGCCCCAGGTCGCCACCTCCTTCAAGATCAACACTCTGTCCCGGGAGCAGCTCGGCCTGCCCCCCGCCCGCTCGCCCCGTGCCCCGCCGCCGCACCACCCCTCCTCCGCTGCCTCCTCGCCCTCCTCCGTGCCCTCCTCCCCGTCCCCATTCTCGCAGCAGTCGGCGCCCCCCCGCCGGCCGCGCACCCACCTGACATCACTGCAGCTGTCCATCCTGCAGTCCTGCTACGAGACCTGCCCCAACCCCAATGCCCTGGAGTGTGAGACCGTGGGGGCGGAGCTGGGCCTGCCGCTCAAGGTGGTGCAGATCTGGTTCCAAAACACCCGGGCCAAGGAGAAGCGCTGGAGACTGCAGCAGCAGAAGCAgCCCGTGCAGCTGACGGTGCTGGAGCCGGCACAGCCCGCGCCCCCCGGCCTGCCCCCTGGGCCCGAGGCACTCCGCGGCCGCTGCCAGCCCTGCGGCGTGGGCTTCGAGTCGCGGGCGGCCGGGCGGGCGCACGTCTTCTCCACCGAGCACCTGGCCGCCCTGCGCAGCTCCAACTACGGCCAGCCACCCTCGCTGCTCTCCACGCACGGCAGCGGCAACGGGGGGGGGACGGGTACTGCCTCCGCCACCGGTACCGGAGCTGCCGGGTCGGGGGCGGCACTGGGGGCTGCGGCCAGCCTCCTCTCCCCGCCTCCCTCCTCcgcgtcctcctcctcctcctcctcttcctctttctcctccCCAGCCACCGGCGCCAGCTAG
>TU166908
GCCGCACCACCCCTCCTCCGCTGCCTCCTCGCCCTCCTCCGTGCCCTCCTCCCCGTCCCCATTCTCGCAGCAGTCGGCGCCCCCCCGCCGGCCGCGCACCCACCTGACATCACTGCAGCTGTCCATCCTGCAGTCCTGCTACGAGACCTGCCCCAACCCCAATGCCCTGGAGTGTGAGACCGTGGGGGCGGAGCTGGGCCTGCCGCTCAAGGTGGTGCAGATCTGGTTCCAAAACACCCGGGCCAAGGAGAAGCGCTGGAGACTGCAGCAGCAGAAGCAgGGCGCGGGCGAGGGGGAGCGCCGGGTGGACACCAGCCCCGGCGGCTTCCTGCTCTACAGCGCCCTGCGGGCCAACCGACCCATCCTGCCCAAGCCCGTGCAGCTGACGGTGCTGGAGCCGGCACAGCCCGCGCCCCCCGGCCTGCCCCCTGGGCCCGAGGCACTCCGCGGCCGCTGCCAGCCCTGCGGCGTGGGCTTCGAGTCGCGGGCGGCCGGGCGGGCGCACGTCTTCTCCACCGAGCACCTGGCCGCCCTGCGCAGCTCCAACTACGGCCAGCCACCCTCGC

Function

symbol description
zfhx2 Orthologous to human ZFHX2 (zinc finger homeobox 2).

NR:

description
PREDICTED: zinc finger homeobox protein 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011853 True 5253 mRNA 0.70 6 5893524 5907174
TU166908 False 566 lncRNA 0.73 2 5906038 5906986

Neighbor

gene id symbol gene type direction distance location
AMCG00011834 NA coding upstream 10086 5871969 ~ 5883438 (+)
AMCG00011836 dcaf11 coding upstream 43516 5846142 ~ 5850008 (+)
AMCG00011835 psme1,LOC107691441 coding upstream 50711 5835610 ~ 5842813 (+)
AMCG00011839 NA coding upstream 68658 5818212 ~ 5824866 (+)
AMCG00011838 LOC101484004,LOC103375112,LOC102294892 coding upstream 101247 5788969 ~ 5792277 (+)
AMCG00011855 NA coding downstream 3307 5910481 ~ 5911354 (+)
AMCG00011852 NA coding downstream 17733 5924907 ~ 5936489 (+)
AMCG00011851 NA coding downstream 44538 5951712 ~ 5973380 (+)
AMCG00011854 NA coding downstream 66923 5974097 ~ 5980285 (+)
AMCG00011850 NA coding downstream 74446 5981620 ~ 5982817 (+)
G133090 NA non-coding upstream 23368 5869945 ~ 5870156 (+)
G133077 NA non-coding upstream 38815 5854488 ~ 5854709 (+)
G133074 NA non-coding upstream 40799 5851874 ~ 5852725 (+)
G133066 NA non-coding upstream 48465 5844264 ~ 5845059 (+)
G133060 NA non-coding upstream 59483 5833815 ~ 5834041 (+)
G133115 NA non-coding downstream 25648 5932822 ~ 6007588 (+)
G133129 NA non-coding downstream 85143 5992317 ~ 6035986 (+)
G133132 NA non-coding downstream 91435 5998609 ~ 5999231 (+)
G133145 NA non-coding downstream 160400 6067574 ~ 6077385 (+)
G133248 NA non-coding downstream 317132 6224306 ~ 6224519 (+)
AMCG00011837 NA other upstream 4640 5886917 ~ 5888884 (+)
G133059 NA other upstream 63992 5828801 ~ 5829532 (+)
AMCG00011830 vmhcl,LOC107560354 other upstream 132276 5759858 ~ 5761248 (+)
AMCG00011806 NA other upstream 773426 5115090 ~ 5120098 (+)
AMCG00011771 NA other upstream 1915862 3903675 ~ 3977662 (+)
AMCG00011873 NA other downstream 177678 6084852 ~ 6102011 (+)
AMCG00011876 NA other downstream 348776 6255950 ~ 6260389 (+)
G133327 NA other downstream 576773 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 638214 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 737702 6644876 ~ 6653731 (+)

Expression


Co-expression Network