AMCG00011854


Basic Information

Item Value
gene id AMCG00011854
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5974097 ~ 5980285 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011854
gggggagACAAACACATCGGATCTTGCAGCGCCTTACCTACAGAACTGCAGGTGAATATTTAACCCTTATATTTATATCAATCTGAGCGGTCAGTGAGTGGCATTATCCGTCTCGGCCGGTTCATTGAGTATTAATTGGTTCTCTGATCAATTGgcagggaaaaaagtttttagaAGCGCAACCAACTTTAATTGCAAAACTTTGGAGAGGGTGCGACAGACAGCGGGGACAACCGGGACGATCGGCGCAATCGTATCGACTAGAAGACACCGCCCCGGTTATTGATCCGATATTGGGGTATCGGTTATTGGtgctgtctgtccgtctgtcgtCCGGCCCGAGACTCGACTGACTGCCAATAGCGATGGTTGGAGGGGTGCGGTCCACTCGGAGGCTGCGCTCTTGGTTGGTGGAGCAGGTGTCCAGTGGCCGCTACCCTGGGCTGATGTGGGACGACGATGCCAAAACGGCCTTCCGGATCCCCTGGAAACACGCGGGCAAGCAGGACTTCAGGACTGACCAGGACGCGGCCATCTTTAAGGCCTGGGCCGAGTACAAGGGCAAGCTGCGACCGGGGCAGCGCTCAGACCCCGCCTCCTGGAAGACCCGCCTCCGCTGCGCCCTGAACAAGAGCCCCGAGTTCTGCGAGGTCAGCGAGAGGTCCCAGCTGGACATCTCGGAGCCGTTCAAGGTCTACCGCCTGGTACCTGTGTCCGAGCAGGGCATCACGCCGCCGACAGCGGAGCGAGGGGCGAAGAGGAGGCGGGTGAAGAACGAGCGCCGCGTGGAGGACGAGGGACAGAAGCAGAGCCGCAGCGTGGAGCCTGTGGCTGTGGAGCCCATCCAAATGCAGGTAGAGCCAGTTACCACCCAGCTGGAGAACATCGACCAATCAGCCGTGGTCTTCAAACTGGAAGAGCACAGCCCTCTGAACGAGATTCAACTGAACTTCCAGATCGAGACCAGCCCCCCCCCGAGAGtGCTGCCCTCTCTGGTGGTGTCGGTGTTCTACGTGGGGCAGGAGGTTCTGCGCCGGGAGAGCCATGGGCGAGACGTCCGGATCGCCTACTACCCCCCcacttcctcctcctgctgTCCGCCCTCACCCCCGCAGCCGAACCTGTCCGGCACCGAGCGCATCAGCCTGCCAGGGCCGGAGGTGGTGCGGGGGAGCGCGGAGAAACGCGCCGCCATCACCGCCCTACTGGGCTTCCTCGAGAGGGGCGTGATGCTGGCCTCCATGGGGAGCGGCATCCGGGCGCAGAGGTTCTGCCAGGGGCGGGTCTACTGGACCGGCAGTCATGCCCCCGATACGGCAGCCGCGGTAAAGCACCTCCCAACAAGAGTCACAGAGCCCCCCTGGGCTGAGAACTATAACCAGTACAGTCCCTGTGGCCCCCGAGCCTCCGAACCAAAACTACACCCAGAAGTCAGTCAACACGGCCGCCTGGCTCACAGTGTGTCTGACTGTCACAGCTCCACATCCAATCGTTGCCGGGCTGACGTGGTTTCCTGGAATCCCGGCTCTGTCGTGGCAGCTGATGACCTCACAGTGAGGGAGCGTCAGCCAATTGCAATGCAGACACCCTGTTTCTGGGTGTGA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011854 True 1604 mRNA 0.61 8 5974097 5980285

Neighbor

gene id symbol gene type direction distance location
AMCG00011851 NA coding upstream 717 5951712 ~ 5973380 (+)
AMCG00011852 NA coding upstream 37608 5924907 ~ 5936489 (+)
AMCG00011855 NA coding upstream 62743 5910481 ~ 5911354 (+)
AMCG00011834 NA coding upstream 90659 5871969 ~ 5883438 (+)
AMCG00011836 dcaf11 coding upstream 124089 5846142 ~ 5850008 (+)
AMCG00011850 NA coding downstream 1335 5981620 ~ 5982817 (+)
AMCG00011862 LOC107565973 coding downstream 7492 5987777 ~ 5995655 (+)
AMCG00011864 NA coding downstream 23392 6003677 ~ 6013110 (+)
AMCG00011861 NA coding downstream 37930 6018215 ~ 6021696 (+)
AMCG00011863 NA coding downstream 49814 6030099 ~ 6050853 (+)
G133108 NA non-coding upstream 71294 5901703 ~ 5902803 (+)
G133090 NA non-coding upstream 103941 5869945 ~ 5870156 (+)
G133077 NA non-coding upstream 119388 5854488 ~ 5854709 (+)
G133074 NA non-coding upstream 121372 5851874 ~ 5852725 (+)
G133066 NA non-coding upstream 129038 5844264 ~ 5845059 (+)
G133129 NA non-coding downstream 12032 5992317 ~ 6035986 (+)
G133132 NA non-coding downstream 18324 5998609 ~ 5999231 (+)
G133145 NA non-coding downstream 87289 6067574 ~ 6077385 (+)
G133248 NA non-coding downstream 244021 6224306 ~ 6224519 (+)
G133264 NA non-coding downstream 342481 6322766 ~ 6347706 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 66923 5893524 ~ 5907174 (+)
AMCG00011837 NA other upstream 85213 5886917 ~ 5888884 (+)
G133059 NA other upstream 144565 5828801 ~ 5829532 (+)
AMCG00011830 vmhcl,LOC107560354 other upstream 212849 5759858 ~ 5761248 (+)
AMCG00011806 NA other upstream 853999 5115090 ~ 5120098 (+)
AMCG00011873 NA other downstream 104567 6084852 ~ 6102011 (+)
AMCG00011876 NA other downstream 275665 6255950 ~ 6260389 (+)
G133327 NA other downstream 503662 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 565103 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 664591 6644876 ~ 6653731 (+)

Expression


Co-expression Network