XLOC_010202 (dbf4)


Basic Information

Item Value
gene id XLOC_010202
gene name dbf4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43139504 ~ 43150489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020203
ACGAACGTCAAGATTACTCAGGTTTTGTGGGAGTGGAGAGAAGTCCCCTCGAGCGGGAAAATGGAAACAGCCTGCGTTGAGTGTTTGTTATGTTGATATTTACAAACAGCGGATGCATTTAATGCagtgttgtgtttttgtgttgtctTTTAATCAACCAACACTTCGAAGTAATGTTGCTGCATGTTGGCGGTTTAAAAAGCAGGTTTAGCCGAGTTTAGGGCTGTAACCGTTACAACCAAAATCTCCATTATGAAACACGACTCTTTCTCCAGGTTTAAGGACCGAGACCCCAAGCTGGAAGGACACAACTGTGCATCATCTAAAAGCAGAATTAAATCAACATGTGATCTTCAGAACAAGCCATTTAAAGGCAGAATATTTTACTTGGATCTTCCTTGGAATATGAAAACCCAGCTGCTGGAAAATGACATCAAGACACTTGGTGGTACAGTGGAAAAGTTCTTCAGTAAGGAGATCAAGTATCTTGTGTCCTGTAAGCCGGAGGCTCGTTATGCCCAGCGTCTCTTGCCTGACTCTCCAGCACCAAGTCCAGATTCAGGGGTCAGCTCTCCTCATCCCAGCAGCAGGAGGGAAAGCCACGGCCAAAGGGGCAGCTCACAGGGAGTCACAGATACGGCAGCTGTAAGCCGAGGCAAATCGCTTGTGGAAAGAGTTAAAGAACAAgaACGTTTTCAGATGAACGGGATCTTGGCCAATGCTGTTGAATGGGGGGTCAAAGTCCTGCATGTTGACGATGTTATTTCATATGTTGACAAGAAGAAAGCTAAAGTCTTGAATGCAAGTCCAGCAGCAAAAGGAGCTGCCAGCATTCAGCACACAGAAAAAAACTCATATCCCAGACACAATGCTGGACGAATTCGTCGACCATTTGTGAAAGTGGAAGACTCCAGCAGGCATTACCGTCCCATTTATCTACCCCTGTCCAACATGCCTGTGTGCAACCTTCGGTCTTTTCCGCCCTGCAGTCCATTTTTGATGGAGGAACAGGGAAAGGATGACCCaaagaagaaacaaaaagaacaaaGGTCTGTTGGGGAAAGAGCAGCGAGAGGAAAGAAAGAGAGACGCAGAGGTCATGAAGGCAgagaaaagaggaaaggaggGTACTGTGAGTGCTGCGAGGTCAAATTTGAAAACTTAAAGGCGCATCTGGATAGTGAGCAGCATCAGGCTTTTTCTAAGAGTAACGAGTATGGAGTCGTGGATCGAGTCACTGCAGGACTGACCTGTGACCTTGTGAACATTAGCACACCCTGCAAAAGGGTGAAATGCAGCACATCAACTCCTATTCTGAATGCTGGAGGAATGCTGTCAGCAATGCAAGATGTGGGATCTGTGAATGCTGATTGCAAACAGGAAAGCGAGGTGTCTTTGCTTTTTGGCTCTACACCAAAGCAGCCTCTTATAGAACGGACCATAGAAAAACCTCTGCTGGTTCGCAAACGTAGCAGGGGCCAGAGTGATTTCCCTTGGAGCAACAGGGACAGCTTGTGTGAACAATCAGATGTTCCAGAAAAGTCCCAGTCCAAGCGTGGATCCTTTGAATGGGAATTGCACTCCCAATCTGCTTTACATAAGTCTGAGGGTGCATCTTTTCTCAGCAGAGAACAGAACTATGGATCTTATACACTTGAATGCAGGACAGAGCAGCAAAACAGGACAAATCCTGACGTGCACCCAGCTCAGCAGTTCAGTGAAAGAAACTACGAATCAGTAACCAGAATTGAAACCTTTAGGACTAACTGCAGTGAAATAATTTATGCACAAAGTATGCCCGAAAATCAAGTTGAAAATTCAGCTCTTTGGACCAGCACAGAACCCAAACCGGACGCTGACAGTCCCTCTATTTCCCTGCAAAGAAAAGTTCGAAGCGTCAGACCCAGAAGACAAAAGCAAGTATCAGCCTCGCACATCGAATCCAGTCACAGACGAGAATCATTGAGGTCTTTTTCACGTGATCAGTCTGTGCAGAAGAGTGAAAAGCCTCCAGCTTCTCTGCTGGATTTATGGAAGCTCTTTCAGTCTAGTGACAGTTTGGATGAAGAGTTTATGGGGTTTTCAGATTAAAAACAAGTGGAGAACACGCATGTATGTGTGTTCTAATATGATTCACTTTgccaaattatatattaatagatCTGATCTTTCTTTCACCAGTAGGATGAAACCAAATTCACTCCGTAGAGGCCTTAAAAAAATTGATTATAGATATGAAAAATAtcttgtgaataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgtatatacatatacatgagGCTAAAAGACGTGGAGACACACAGTGAGTATGTACATTGGTTGTATATTGATTGAAGAATATAACAGCTTTTATATATGTCTGGGAATGATTTTCttgattaaatagaaaatattcaCCAA

Function

symbol description
dbf4 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of cell cycle phase transition. Predicted to be part of Dbf4-dependent protein kinase complex. Predicted to be active in nucleus. Orthologous to human DBF4 (DBF4 zinc finger).

GO:

id name namespace
GO:0010571 positive regulation of nuclear cell cycle DNA replication biological_process
GO:1901987 regulation of cell cycle phase transition biological_process
GO:0005634 nucleus cellular_component
GO:0031431 Dbf4-dependent protein kinase complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-091020-13 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of cell cycle phase transition. Predicted to be part of Dbf4-dependent protein kinase complex. Predicted to be active in nucleus. Orthologous to human DBF4 (DBF4 zinc finger).

Ensembl:

ensembl_id ENSDARG00000074796

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020203 True 2556 mRNA 0.44 12 43139504 43150489

Neighbor

gene id symbol gene type direction distance location
XLOC_010201 NA coding upstream 15268 43119050 ~ 43124236 (+)
XLOC_010200 rundc3b coding upstream 21409 43077909 ~ 43118095 (+)
XLOC_010199 NA coding upstream 91225 43041505 ~ 43048279 (+)
XLOC_010198 NA coding upstream 237764 42897582 ~ 42901740 (+)
XLOC_010197 CR854827.2 coding upstream 261493 42876446 ~ 42878011 (+)
XLOC_010203 adam22 coding downstream 2238 43152727 ~ 43284939 (+)
XLOC_010204 mrpl32 coding downstream 193986 43344475 ~ 43346916 (+)
XLOC_010205 ccdc127a coding downstream 197477 43347966 ~ 43350505 (+)
XLOC_010206 rnf144b coding downstream 218083 43368572 ~ 43392455 (+)
XLOC_010207 sqlea coding downstream 250516 43401005 ~ 43413293 (+)
XLOC_010195 NA non-coding upstream 338773 42795604 ~ 42800731 (+)
XLOC_010208 NA non-coding downstream 536664 43687153 ~ 43687568 (+)
XLOC_010209 NA non-coding downstream 615490 43765979 ~ 43818565 (+)
XLOC_010211 CR925804.2 non-coding downstream 1454837 44605326 ~ 44605440 (+)
XLOC_010213 CR925804.1 non-coding downstream 1553883 44704372 ~ 44705154 (+)
XLOC_010216 FP085399.1 non-coding downstream 2052601 45203090 ~ 45206236 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03101390_03106479 NA coding CI01000027 null 3101089 ~ 3106479 (-)