CI01000027_03101390_03106479


Basic Information

Item Value
gene id CI01000027_03101390_03106479
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3101089 ~ 3106479 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03101390_03106479.mRNA
ATTCAAAACTAGAGGGACATAATAGTGCATCATCTAAAAGCAAAATTAAACCAGCATGTGATGCTCTTCAGAACAAACCCTTTAAAGGGAGAATATTTTACTTGGATCTGCCATGGAATATGAAAACACAGCTCTTGGAAAATGACATCAAAACACTTGGTGGTACAGTGGAAAAGTTCTTCAGTAAGGAGATCAAGTATCTTGTGTCCAGTAAGCCGGAGGCTCGTTATGCCCAGCGTCTCCTGCCGGACTCCCCAGCACCCAGTCCGGATTCTGGCGTCAGCTCTCCTCATCCCAGCAGCAGGAGGGAAAGCCACGGGCACAGAGGCAGCTCTCAGGGAGTCACAGATACGGCGGCTATAAGTCGAGGCAAATCTCTTGTGGAAAGAGTCGTTAAGGAACAAGAACGGGTTCAGATGAATGGGATCCTGGCCAATGCTGTGGAATGGGGGGTCAAAGTCCTGCATGTTGATGATGTTATTTCTTACATTGACAAGAAGAAAGCAAAAGTCATTGCGGTGAATGCAGCTAATCCAGTGGTTAAAGGAGCTGCTAGCATTCAGCACACAGAGAAAAATACATATCAGAGACACAATGCTGGAAGAATTCGTCGACCATTTGTGAAAGTGGAAGACTCAAGCAGGCATTATCGTCCCATCTACCTTCCCGTGCCCAACATGCCTGTGTGCAACCTCTGCTCTCTTCCACCCTGCAGTCCATTCCTAGTGGAGGAACATGGGAAAGATGATACGAAGAAGAAACAGAAAGAGCAAAGGTCTGGAGGGGAACGAGGGAAGAAAGAGAGGCGCAGAGAAAAGAAGAAGGGAGGATACTGTGAGTGCTGTGAGGTCAAATTCGACAACCTAAAAGCGCATTTGGAGAGTAAGCAGCATCAGGCTTTCTCAAAGAGTGAGGAGTACAGAGTTGTGGATCGAATCACTGCGGGACTGACCTGTGACCTCATGAACATCAGCACTCACTGCAGAAGGGTGAAATGCAGTACATCAACCCCTCTTCTGTGTGCTGGAGCCATGTTGCCAGTAAAGGAAGATGTGGGATCTGTGAATGTTGATTGGAAACCGAAAAGCGAAGGGTCTTTGCTTTGGGACTCTACAGCAAAGCACTCTCTTTCAGAACAGATCACAGGAAAACCTCTTGTGGTTCGCAAACGCAGCAGGGGCCAGTGTGAATTCCCTTTTAGCAACAGGGACAGCTTGTTTGACCAGTCCGACATTCCGGAGAAATCCCAGTCCAAGCGTGGATCCTTTGAGTGGGAATTCCACTTGCGATCTGCTGTGCGGAAATCTGAAGGTGCATCTTTTCTCAGCAGAGAGCAGAACTCTGACTCTAATGCATTTGAATGCAGGACAGAACAACAAACCAGGACAAACCCTGACACGCACCCAGCTCAAGAGTTCAGTGAAACAAACCGAGAAACAGTAACTGGAAATAAATACTTTAGGACTAACTGCAGTGAAATTTATACGCATAGTATGCCTGAAAATCAAGTTGAAAATTCAGCTCTTTGGCCTTTAGCCATCACAGAACCCGAACCGGACCATGACAGCCCGTCTAATTCACTGCAACGGAAGGTTCGGAATGTCAGACCCAGAAGAAGAAGGCAAATACCAGCCTTGCACATTGAATCCAGTAAAGAAAGAGAATCATTGAGCTCTCTTTCACCTGTTAAACCTGTACAGGAGTGTGAGAACCCACCAGTGTCTGTCCCGGACCTGTGGCAGCTCTTTCAGTCCAGTGACAACATGGATGAAGACTTTAAGGGTTTTTGAGATTAACGCTGGTTAGAGAAACTGAAGAGTGGAGAACACGTATGTATGTGTTATAAAGGTTATTACTATACCAAATAATATATATATTAATAGATCTGTGTTTTCTTCCATCAGTAGAATGGAAAACTGCATTCTCACCAAACAGGCTTTAAAAGAAAACTTTGATTATAGACTGGAAAAATACCTACTGACTATATAATGAGTGGAGCTACACAGTATGTACATTAATGTTGTGTATGTAATTGAGGGATATAACAGCTATGAGACTGTCTTGAAATGATTTCCTGGTTTCTGTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03101390_03106479.mRNA True 2091 mRNA 0.45 11 3101089 3106479

Neighbor

gene id symbol gene type direction distance location
CI01000027_03035114_03099542 ADAM22 coding downstream 1547 3035114 ~ 3099542 (-)
CI01000027_02989304_02990854 NA coding downstream 110235 2989289 ~ 2990854 (-)
CI01000027_02984235_02987159 CCDC127, CCDC127A coding downstream 113930 2984007 ~ 2987159 (-)
CI01000027_02961909_02972343 RNF144B coding downstream 128746 2961764 ~ 2972343 (-)
CI01000027_02950348_02954214 SQLE, SQLEA coding downstream 146875 2950106 ~ 2954214 (-)
CI01000027_03117518_03132307 RUNDC3B coding upstream 9154 3115633 ~ 3132307 (-)
CI01000027_03186359_03192441 NA coding upstream 79620 3186099 ~ 3192441 (-)
CI01000027_03261114_03264008 POLR3GLB, POLR3GL coding upstream 154635 3261114 ~ 3264008 (-)
CI01000027_03297095_03298505 NA coding upstream 190553 3297032 ~ 3299512 (-)
CI01000027_03301041_03302954 NA coding upstream 194421 3300900 ~ 3303506 (-)
G139883 NA non-coding downstream 153173 2947331 ~ 2947916 (-)
G139929 NA non-coding downstream 171323 2929308 ~ 2929766 (-)
G139845 NA non-coding downstream 245489 2788349 ~ 2855600 (-)
G139743 NA non-coding downstream 363018 2737348 ~ 2738071 (-)
G139839 NA non-coding downstream 366772 2733645 ~ 2734317 (-)
G139939 NA non-coding upstream 5789 3112268 ~ 3114186 (-)
G139972 NA non-coding upstream 31328 3137807 ~ 3138013 (-)
G139967 NA non-coding upstream 51916 3158395 ~ 3159374 (-)
G139980 NA non-coding upstream 53571 3160050 ~ 3160407 (-)
CI01000027_02226447_02227499 NA other downstream 873064 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 975061 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 1780928 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 1854112 1240478 ~ 1246267 (-)
G139117 NA other downstream 2863510 234212 ~ 237579 (-)
G140118 NA other upstream 395055 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 680899 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 815917 3922242 ~ 3931033 (-)
G141481 NA other upstream 1265768 4372247 ~ 4412810 (-)
G141488 NA other upstream 1400996 4507475 ~ 4508971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010202 dbf4 coding NC_007127.7 CM002900.2 43139504 ~ 43150489 (+)