XLOC_010237 (rpz3)


Basic Information

Item Value
gene id XLOC_010237
gene name rpz3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46453176 ~ 46465096 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020250
GAGGTGTACATGAAGCATTCGCAGGGCGATCGACGCATCATGGAAAACCTCTGCACGCGGCTCTCGTATCTGTTCTGCATCGGCCTTATTGCATTAATGGGCTACGCCGGTATCGTCGGGGATGATGAGGAAGCTCTACGCATCGAGTGGGAGGAGAAAATGAAAGATGTGGCTAAGAAAATGACAGAAGTGTTAAAGAaAATGTCCAGTCCCCTAGAGCGGGTTGTTGCGCAGAAGAAGGAGGCGATTGAAGCAGTGATGGAAATGTTTGAGAAGGGAGCTGAGGTGTTGGCCAGCGCTGTAGGAGGACTGAGTCCACTTTTTGAAGCTGCAGCTCCCGTCCTCAAACTCGTCCTCAACAACGTTGAAAGCAAGGAGGTCACATATGTCAAAGATCAGTTTCTAGTCGTGAGAAGCAAACTAGACGTCCTCTCATGTCAACTGCAGGACATTGACTCTGAAATAAGGAGGAGACGCCTGGATACTCAGTTCTTCTCTGTGGAGGAAAATATGCGTAATCAGTTTAGAAAATACATTGACATTCTGGAGGCCAAACCGGAGTATAAGGAGGTAAAAAAACGCTTGTTCTTAGATCATTTTTTCATAACAGGTGGTGAAAAGAATCTGTGTTTGCTTTACGATGCTGTGATGGGGAACAGCACATTCGGGGAGCCAATCCTGGAGGTTGTGGAGCAATACGAGGCCAGAAACAGAAGAGTTCTGGAAGATTTCTGTGTGCGGCTGAAGGAGCTGCTCTGTCTGGGAATAATCGCTCTGCTGGGATATTGTTTCCTCACTCAGGGAGAAGAAGCGGAGCAGGAGA
>TCONS_00020251
TCTTTTCCACACTCGGCAAATGATCACGATTCACGGCATCTTGCTTTGAAGTCGAACCTGAACCCGGAGGGATCATTTGGCAATTTGGAGGAGCTCCTCATCCTGAGAGACaAATGTCCAGTCCCCTAGAGCGGGTTGTTGCGCAGAAGAAGGAGGCGATTGAAGCAGTGATGGAAATGTTTGAGAAGGGAGCTGAGGTGTTGGCCAGCGCTGTAGGAGGACTGAGTCCACTTTTTGAAGCTGCAGCTCCCGTCCTCAAACTCGTCCTCAACAACGTTGAAAGCAAGGAGGTCACATATGTCAAAGATCAGTTTCTAGTCGTGAGAAGCAAACTAGACGTCCTCTCATGTCAACTGCAGGACATTGACTCTGAAATAAGGAGGAGACGCCTGGATACTCAGTTCTTCTCTGTGGAGGAAAATATGCGTAATCAGTTTAGAAAATACATTGACATTCTGGAGGCCAAACCGGAGTATAAGGAGGTAAAAAAACGCTTGTTCTTAGATCATTTTTTCATAACAGGTGGTGAAAAGAATCTGTGTTTGCTTTACGATGCTGTGATGGGGAACAGCACATTCGGGGAGCCAATCCTGGAGGTTGTGGAGCAATACGAGGCCAGAAACAGAAGAGTTCTGGAAGATTTCTGTGTGCGGCTGAAGGAGCTGCTCTGTCTGGGAATAATCGCTCTGCTGGGATATTGTTTCCTCACTCAGGGAGAAGAAGCGGAGCAGGAGAAGATCCAAGAGTGGAGCACCAAGATCCAGGAGATCGAGACCAAAATGAAGGAAACCATTGAGAAATGTGTGCAATCATtcccagagcaagctgaactagACATCAAGAGGCTCCTGAAGGAAAAGGAGGAAGCAAACCTTCAGGAAACAGCCAGAGAACTGCTGGACTTCCTGACGAAGAAGTTCGACTGGGTCTGCTGGTCCATCAGAGTCATCAGCAACATGGGCAAAATTAGCAACTTGAGAGCCGGACAAAACTTTCAGTGCGTGTCCGGACAGAAATATTTGGAAGTTTCTCAAGGAAACGAAACACACCTGGTGGTCTCGTACTGCAGTGACCCTCAGCCGGTGCCCAATGAGAGCATCAAACAGATGATGGAGGGTCCTGCCAGGAAAGGAGACGCTAAAGCTGTGGTGGAGATGCTGGAGAAGCAGTTAGCAGGGTTTCTGATTCACGCCATCAGTCGACACAAGGAGAGCTTCACTCTGTCCAGCTTTCCAGAAGAGTGTCACTACTGGGAGAAACATAAGAACGTCAATGTGTGCGTGCATTCAGAGTAGATGTAACTTATATATCtaacactttttacatttgtgATGCAAGATGTACTCAAATAAGGTACCGTTGCACAGATCCACTTTTACGTAATCTTGATTATTCATGTAGCTCCTGCCTatccaaataaaaatgtaaatgctgatgttaataatttgttaagctctataaaataaatgcatgaagtGGCTGTATGTTGAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4784 No description available

Ensembl:

ensembl_id ENSDARG00000069728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020250 False 823 mRNA 0.48 2 46453176 46464340
TCONS_00020251 True 1491 mRNA 0.46 2 46459680 46465096

Neighbor

gene id symbol gene type direction distance location
XLOC_010236 rpz6 coding upstream 18138 46430627 ~ 46435038 (+)
XLOC_010235 rpz coding upstream 29334 46401576 ~ 46423842 (+)
XLOC_010234 nr2f5 coding upstream 125875 46294337 ~ 46327301 (+)
XLOC_010233 NA coding upstream 171020 46276944 ~ 46282156 (+)
XLOC_010232 NA coding upstream 182288 46269724 ~ 46270888 (+)
XLOC_010238 rpz5 coding downstream 27660 46492756 ~ 46496293 (+)
XLOC_010239 rpz4 coding downstream 32053 46497149 ~ 46503818 (+)
XLOC_010240 NA coding downstream 90298 46555394 ~ 46569152 (+)
XLOC_010241 NA coding downstream 91247 46556343 ~ 46569484 (+)
XLOC_010242 ubqln4 coding downstream 200978 46666074 ~ 46681170 (+)
XLOC_010228 NA non-coding upstream 462334 45988431 ~ 45990842 (+)
XLOC_010225 NA non-coding upstream 640852 45787042 ~ 45812324 (+)
XLOC_010222 CU459129.1 non-coding upstream 786324 45666735 ~ 45666852 (+)
XLOC_010246 NA non-coding downstream 325581 46790677 ~ 46794172 (+)
XLOC_010247 NA non-coding downstream 331330 46796426 ~ 46797326 (+)
XLOC_010249 NA non-coding downstream 361492 46826588 ~ 46830237 (+)

Expression


Co-expression Network