XLOC_010244 (rab25b)


Basic Information

Item Value
gene id XLOC_010244
gene name rab25b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46695777 ~ 46714052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020259
ATTACTCTCATTGCTGTTATATACGTAGCATACCGTGAGCTGAGCATagcatttctgttttatttctttaGGACTCGAGCTCATGCAGAATTAAGTGCAGATTAGATAAGAAAGATCAGCTTTGGAGTGGAAATATGGGGTCTGATGAGGCCTACAACTTCGTTTTTAAAGTGGTTCTTATTGGAGAATCCGGTGTTGGCAAAAGCAACTTGCTGTCACGGTTCACCAAGAACGAGTTTAGCCACGACAGCCGGACGACCATCGGCGTGGAGTTCAGCACTAGAACTGTGCAGCTGAACGGACTCACTATTAAAGCTCAGATCTGGGACACCGCTGGATTGGAGCGGTACCGCGCCATCACCTCTGCATATTATCGAGGAGCGGTCGGAGCTCTGCTGGTTTATGATATTTCCAAGCATCTGACGTATGAAAGTGCCGAGCGCTGGCTAAAGGAGCTCTACGATCACGCCGATCCACACATCGTAGTGATGCTGGTGGGAAATAAATCCGACCTGGCAGCCGTGCGCTCCGTTCCTACAGAGGACGCCAAAGACTTTGCAGAGAAGAATGGTCTTCTGTTCATGGAAACCTCAGCTCTGGAGTCAGTAAATGTTGAAGCAGCTTTCAAcactgtgcttacagAAATCCACAAGAAGGTGAACAGCAAAGAAGTGACCCGCGGCTCCATCAGTGCAGTCACGTTGTCTCAACCTAAAACTCCAGCAGAAACCCAGGAGGAGAAGAAAACCTGCTGTAAAAACTTGTGAAAGAGTCAttcagatacagttgaagtccgaattattagccctcctgaattattagccccctatatatttatttcccctatttctgttaaacagaaagatttctttaacacatttcttaacataatagttttaataactcatttctaataactttttttttatctttgccatgatgacagtacataaaattctacaagatatttttcaagatatgagtattcagcttaaagtgacatttaaagagcccatattatacatgaaatagggtcatatcttggttgtaagggtctccaacaacagtctaatatgcatgcaaggtcaaaaaacactttcatgggcttataatctgcatttatttttacctaattatcccagcgactctcgtatgaatcgtccagtgattcatttgttcccaaacccctccttagcgcgaagctaatctgcgctgattggacctaTGACAGTCGATTGGTCGACTCcccttcagtgagagagtgaaatgcccaacagctattcagcaat

Function

symbol description
rab25b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0055037 recycling endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-113 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000052954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020259 True 1289 mRNA 0.43 5 46695777 46714052

Neighbor

gene id symbol gene type direction distance location
XLOC_010243 lamtor2 coding upstream 4571 46684855 ~ 46691206 (+)
XLOC_010242 ubqln4 coding upstream 14607 46666074 ~ 46681170 (+)
XLOC_010241 NA coding upstream 126293 46556343 ~ 46569484 (+)
XLOC_010240 NA coding upstream 126625 46555394 ~ 46569152 (+)
XLOC_010239 rpz4 coding upstream 191959 46497149 ~ 46503818 (+)
XLOC_010245 rab11al coding downstream 11035 46725087 ~ 46741779 (+)
XLOC_010246 NA coding downstream 76625 46790677 ~ 46794172 (+)
XLOC_010247 NA coding downstream 82374 46796426 ~ 46797326 (+)
XLOC_010248 CABZ01027551.1 coding downstream 93162 46807214 ~ 46808014 (+)
XLOC_010249 NA coding downstream 112536 46826588 ~ 46830237 (+)
XLOC_010233 NA non-coding upstream 413621 46276944 ~ 46282156 (+)
XLOC_010232 NA non-coding upstream 424889 46269724 ~ 46270888 (+)
XLOC_010228 NA non-coding upstream 704935 45988431 ~ 45990842 (+)
XLOC_010251 CR848802.1 non-coding downstream 298289 47012341 ~ 47012457 (+)
XLOC_010255 NA non-coding downstream 669743 47383795 ~ 47389378 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding CI01000027 null 1072015 ~ 1076227 (-)