XLOC_010255


Basic Information

Item Value
gene id XLOC_010255
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47383795 ~ 47389378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021753
tatatatatatatatatatatatatatatatatatatatatagttgaagtcagaattattagcccctatttaatttttttttcttttttaaatatttcccaaataatgtttaacagagcaaggacattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgcttaatttcagctagaaaaaactgtatttaatttattaaacaccattttaaggacaaaattattagcccctttaggttACTTTTTTTtagatacagaacaaaccatcattatacaacaacttgcctaattaccctaacctgcctagttaacccaattaacctagttaagcctttaaatgtcactttaagctgtacaaaagtgtcttgaaaaatataaagtcagatattatttactgtcatcatggcaatgatcaagtaaataagttattagaaatgagttattaaaaatgttatatttaaaaatatgaagaaACTTCCTTGTTAAACAGACactggagaaaaaataaacagggggcccaATAATTCagtgggtttaataattctgacttcaactgtgtatagaaTATAAATTCATTTTGAGCTATTAAACTGACACATGCACACAATTAGCATAAGAACAGCGCTGATTTATGATTGAGGGCAGTGACGACGTCATCAAGAGTGTAATCCTGAGACTTCTTCAGATGAATCAAACGTCTTGAAGAACCTGAAAGCGCAGGTCAAACGCACAATCGTTCAACTAATAGCCCGGATGAATCTCACAGGGGTAATCCAGCGATTAAAGCAATTTTCAGTGAATAATTCATAATGGCCAGCTGTTTCCCAGCGATATTTAAACCCAGCTCATGTTCAGTCTCTGGATGATCTGATCTGATGCTCACAGTAGTGAAACCAAACAGCAGCCATGAGGATCGTCCTGCTGCTGTTTCTGCTGTTTTCTGCtttgaatcattttattttaagccaGAACGAGGAAAGCTGGATCAATGAGGGCTATCCAGACGAGGTAAATTTGCTGGAGGCTGATCTACAAACAGCGCTGGAAAGAGTCAGTCGAGCACCCGGACTGCAACAGGTTTTCGGcctaatggggaaaagatcatcAGCAAGATCCCAGATAACACGAAGACGACAGAAGTTCCAGACGTTTGTGGGTCTGATGGGGAAACGGAATGTCGCTGAATCAGGCGAGTCTGATATTCTGCTTTCTTTACCTTCAAATGTAAattctacatttaaaaataaattctatttATGTTTCCTTCTAGGACAAACACAAGCGCTGTGATTTGAAGAAGCTTTTAACATGTAACCACCAGAACATCAGGCAGAAATGTCTTCAGAAATTTGTCTTCTCATATTTGTTTAATGAAATATGGAATAAAATGTGTGTATTATGACGTATACGTGTGCATAATATTCTAATTATGTTAACATTTTAGCAAAGTTTTCTGCAGTTTCAGTCAAAcagaatttaaagggatagtcaaccaaaaaatttaaactaaacaagatattatatataatttaggaAAATTGCAGTCAAAtctaggaacaaaaaaaaaataccctGAATGTCGATGACAATTTTTcaagcattcttcagtatattttttctttgtgatgaacagaataaagaatgacaaaaaaagtttgaaacaagtgaaggatgagtaaatattgttgagtgaactacccctaaAAAAAGATTTGCAATGGGTGAACAGCGACACCTAGTGCTGTAATGCTGTAATTTTCATCTCTAGAACCATCTTAGACTTGACTGTTACAATAacctatatatacagttgaagtcagaattattagaccccctgaattattagcctcagtgttaattttttcccccaacttctgtttaacaaagattttttcaacacatttctaatcataatcaatttaataactcatctctaataactgatttattttatctttgtcatgatgacagtgaataacatttgactagatatttttcaagacacttctatatggcttaaagagacatttaaaagcttaactagggtaactaggcaagtttgggtaattaggcaagttattttataacgatggtttgttctgtagactatcaaaaatatgtagcttaaaagggctcaaaactgcttttatgttagccaaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaattgtcttgctctgttaaacataatttgggaaatatttaaaaaaggaaaaaaaattcaaaggggggctaataattctgacttcacttgtatatatatgtatatatatgtgtatatatatatatatatatgtatatatatgtgtgtatatacacacacacacacacacacacacacacacacacacacacgcacacgcacgcacacacacgcacacacacgcgcacacacacacacacacacacacacatacatatacatacatacatacatacacacacacacacatatatatatatatctatatatatatatatatatatatatatatatata
>TCONS_00021752
tatatatatatatatatatatatatatatatatatatatatagttgaagtcagaattattagcccctatttaatttttttttcttttttaaatatttcccaaataatgtttaacagagcaaggacattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgcttaatttcagctagaaaaaactgtatttaatttattaaacaccattttaaggacaaaattattagcccctttaggttACTTTTTTTtagatacagaacaaaccatcattatacaacaacttgcctaattaccctaacctgcctagttaacccaattaacctagttaagcctttaaatgtcactttaagctgtacaaaagtgtcttgaaaaatataaagtcagatattatttactgtcatcatggcaatgatcaagtaaataagttattagaaatgagttattaaaaatgttatatttaaaaatatgaagaaACTTCCTTGTTAAACAGACactggagaaaaaataaacagggggcccaATAATTCagtgggtttaataattctgacttcaactgtgtatagaaTATAAATTCATTTTGAGCTATTAAACTGACACATGCACACAATTAGCATAAGAACAGCGCTGATTTATGATTGAGGGCAGTGACGACGTCATCAAGAGTGTAATCCTGAGACTTCTTCAGATGAATCAAACGTCTTGAAGAACCTGAAAGCGCAGGTCAAACGCACAATCGTTCAACTAATAGCCCGGATGAATCTCACAGGGGTAATCCAGCGATTAAAGCAATTTTCAGTGAATAATTCATAATGGCCAGCTGTTTCCCAGCGATATTTAAACCCAGCTCATGTTCAGTCTCTGGATGATCTGATCTGATGCTCACAGTAGTGAAACCAAACAGCAGCCATGAGGATCGTCCTGCTGCTGTTTCTGCTGTTTTCTGCtttgaatcattttattttaagccaGAACGAGGAAAGCTGGATCAATGAGGGCTATCCAGACGAGGTAAATTTGCTGGAGGCTGATCTACAAACAGCGCTGGAAAGAGTCAGTCGAGCACCCGGACTGCAACAGGTTTTCGGcctaatggggaaaagatcatcAGCAAGATCCCAGATAACACGAAGACGACAGAAGTTCCAGACGTTTGTGGGTCTGATGGGGAAACGGAATGTCGCTGAATCAGGACAAACACAAGCGCTGTGATTTGAAGAAGCTTTTAACATGTAACCACCAGAACATCAGGCAGAAATGTCTTCAGAAATTTGTCTTCTCATATTTGTTTAATGAAATATGGAATAAAATGTGTGTATTATGACGTATACGTGTGCATAATATTCTAATTATGTTAACATTTTAGCAAAGTTTTCTGCAGTTTCAGTCAAAcagaatttaaagggatagtcaaccaaaaaatttaaactaaacaagatattatatataatttaggaAAATTGCAGTCAAAtctaggaacaaaaaaaaaataccctGAATGTCGATGACAATTTTTcaagcattcttcagtatattttttctttgtgatgaacagaataaagaatgacaaaaaaagtttgaaacaagtgaaggatgagtaaatattgttgagtgaactacccctaaAAAAAGATTTGCAATGGGTGAACAGCGACACCTAGTGCTGTAATGCTGTAATTTTCATCTCTAGAACCATCTTAGACTTGACTGTTACAATAacctatatatacagttgaagtcagaattattagaccccctgaattattagcctcagtgttaattttttcccccaacttctgtttaacaaagattttttcaacacatttctaatcataatcaatttaataactcatctctaataactgatttattttatctttgtcatgatgacagtgaataacatttgactagatatttttcaagacacttctatatggcttaaagagacatttaaaagcttaactagggtaactaggcaagtttgggtaattaggcaagttattttataacgatggtttgttctgtagactatcaaaaatatgtagcttaaaagggctcaaaactgcttttatgttagccaaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaattgtcttgctctgttaaacataatttgggaaatatttaaaaaaggaaaaaaaattcaaaggggggctaataattctgacttcacttgtatatatatgtatatatatgtgtatatatatatatatatatgtatatatatgtgtgtatatacacacacacacacacacacacacacacacacacacacacgcacacgcacgcacacacacgcacacacacgcgcacacacacacacacacacacacacatacatatacatacatacatacatacacacacacacacatatatatatatatctatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0071711 basement membrane organization biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0070069 cytochrome complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0019838 growth factor binding molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021753 False 2566 lncRNA 0.33 4 47383795 47389378
TCONS_00021752 True 2485 lncRNA 0.33 5 47383795 47389378

Neighbor

gene id symbol gene type direction distance location
XLOC_010254 col28a1b coding upstream 39648 47308856 ~ 47344147 (+)
XLOC_010253 ica1 coding upstream 151649 47207691 ~ 47232146 (+)
XLOC_010252 NXPH1 coding upstream 179494 47203422 ~ 47204301 (+)
XLOC_010250 thsd7ab coding upstream 205661 46869010 ~ 47178134 (+)
XLOC_010251 CR848802.1 coding upstream 371338 47012341 ~ 47012457 (+)
XLOC_010256 slc25a32b coding downstream 39343 47428721 ~ 47450004 (+)
XLOC_010257 NA coding downstream 374847 47764225 ~ 47764819 (+)
XLOC_010258 NA coding downstream 609454 47998832 ~ 47999411 (+)
XLOC_010259 CR388140.1 coding downstream 633915 48023293 ~ 48023408 (+)
XLOC_010260 CU929195.1 coding downstream 768931 48158309 ~ 48158423 (+)
XLOC_010249 NA non-coding upstream 553558 46826588 ~ 46830237 (+)
XLOC_010247 NA non-coding upstream 586469 46796426 ~ 46797326 (+)
XLOC_010246 NA non-coding upstream 589623 46790677 ~ 46794172 (+)
XLOC_010241 NA non-coding upstream 814311 46556343 ~ 46569484 (+)
XLOC_010261 CU183074.1 non-coding downstream 867635 48257013 ~ 48257130 (+)

Expression


Co-expression Network