XLOC_010266 (brd2b)


Basic Information

Item Value
gene id XLOC_010266
gene name brd2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48714048 ~ 48747788 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020286
CGGAAATCGAAAGGCGCCATTTGCTCTTTGGACGGCGCAGGGTGAGCTCGAGCATAAGGTGCAGAATAGCAATAAAACGGGGGCGAAAACGCAGGATTTCGCACCGCAAAGCGCGCGCGATACATCCGGATGGAGGCGGCCATCAACCAGTCTTTTGACAGCTCTGTGGGAGTGGGTCTGTCTGTCATGGCCATGATGGAGCAGAATTCAGGCAAGCGTATCCGCAAGCCCTCGCTGCTCTATGAGGGCTTCGAGAGTCCATCTCTGCCTCACGCACCTCCACCCGGACCTCCTCCACCCCTGCAGCCCCCCGTCAGAGACCCCAGCCGACAAGGACGAGCCACCAACCAGCTGCAGTTCCTTCACAAGGTCCTGGTGAAAGCTCTGTGGCGCCATCATTTCGCCTGGCCCTTCCATGAGCCTGTGGACGCGACTCGACTCAACTTACCCGACTATCATAAGATCATTAAGCAGCCGATGGACATGGGCACAATCAAGAAGAGACTGGAAAATAACTACTACCGCGGTGCCAGCGAATGCTTGCAGGACTTTAACACCATGTTCACCAACTGCTACATCTACAACAAGcCTGCAGATGACATTGTGTTGATGGCACAGTCTCTGGAAAAGGTGTTCTTACAGAAGGTCGCCCAAATGCCTCAGGACGAGATCGAGTTGCCCTCTCCTACGCCGAGAGGAAGAGGAAATAAAAGCGTCAAAGCACGGAAAAGCAGAGGAGGCAGTGTAACATCGGCTCACCAGGTTCCAGCCGTGTCTCAGTCAGCCTACTCTCCTTCCTCACCTGAAACACCAGATTCGCAGTTCTCCACCCCTCCACAGACCCTGCTGAGCAGCAGCGGCCCTCCTCCATCTCTGATCACCCCACCACACACTCAACCCACAGCAAAGAAGAAGGGTGTAAAGCGTAAAGCCGACACCACCACTCCCACTACACTCGGCTTCCCAGTGACTCCGGCTCCTCGAATGGGAGGCCTAGGTAAGGGCCACGGTTCGGGTGGAGAGATGCCCCACTCTCTGTCCTCCATGCCTCTGGACTGCTCTCCCAGCatgggtgtgaatgagtctgtCCACCTCCAGCCTGTACTGGGGGGTCGCCCGCTGTCTCGACGTCCCATCAAACCTCCACGTAAAGATCTGCCGGACTCCGTGCGGCCGCATCAGCCCTCCCGAAGAGGAAAACTGAGCAAACAGCTTCGCTACTGCAGTGGCGTCCTGAAGGAGCTGCTGTCCAAAAAACACGTGGCTTATGCCTGGCCCTTCTACAAGCCTGTAGATGCATCAGCGCTGGGTCTCCACGACTACCACGACATCATCAAACACCCCATGGACCTCAGCACTATTAAGAGGAAGATGGATGAGCGCGAGTACAGAGAAGCTCAGCAGTTCAGCGCTGATGTCAGGCTCATGTTCTCCAACTGCTACAAATACAACCCACCAGATCATGATGTGGTGTCAATGGCCAGAAAACTGCAGGACGTGTTTGAGTTCCGTTTCGCGAAGATGCCAGATGAGGTTTCGGATGAGGAGGATTTGTCCCCAATGCCTATAGGCCGAAACATGGGCATGCTGGGAATGCACCGCTcatcctcttcttcctcctcctcttcctcttcatcctcctcttcctcctcgtcAGAGAGTGAGCCGAGCAGTGACAGCGAGCCAAGCAGCGACAGCAGCCCGAGCTCGGACAGTGAAGAGGAGAGAGCTCAACGCCTGGCTCAGCTTCAGGACCAGCTCTGTACTCAGctgcgAGCGGTGCATGAGCAGCTCGCAGCTCTCTCATCCGGTCCGATCGTCAAACCCAAGAGGAAACGAGAGAAAAAGAAGgacaagaaaaagaagaagaagccaGAGAAGCGCAGAGGAAGTCGAAGTTTGATGAGTGATGAGCGGGACAAACCTGCCAAACTGTCCAAAAGCAAATCCAGCAGAGCCTCACTCTCATCCTCACAGAGCAAGAAGGGTACTACCAAGAAAAGCAGCAAAaaGAACACAAAGAAATCCTCCTCGTCATCTCGTTTTCCAGCAGCCCCAGAGGTCCCGCTGCCTCATTATGACTCTGAGGAGGAAGAGGACGGTCTTCCCATGAGCTACGACGACAAGCGGCAACTCAGCCTGGACATCAACAAGCTGCCCGGAGAAAAACTGGGGCGCGTGGTTCACATCATCCAGTCCAGAGAGCCTTCACTGCGCGACACAAACCCAGAGGAGATCGAGATCGACTTCGAAACCCTCAAACCATCCACACTGCGCGAGCTGGAGAGATACGTGATGACCTGTCTGCGCAAGAAGCCCCGCAAACCATACGGTGAtgAAGACTGGAGGAGGAGGGAAGAGTCGAGAGGAGTTGGCTCTGGAGAAGAAGAGAGAGCTGGAGCAGAGACTGCAGGATGTGAGCGGACAGCTCAACTCCACCAAGAAACCCCAGAAACCCAAAGAAAAGGCCAGCGGTGCGGAGCCTCATGCGATGGCATCCCGTCTCAGCGGCAGCAGCTCCAGCTCCGACTCTTCCTCCTCATCTTCCTCCTCATCCTCATCTGACACCAGTGACTCAGACTCCAGGTGAACCCGGACACTATCTGTCCTGGAAAACaaacattcacagacacactgtTTTCTCTGTGCTCCACCGTTTACTTCAGTGTAAAAACATACGTGTGTAAATACTGCGTAGGacgagtttttttcttttataaagaagacttttaccaaaatGCCCATAATGGGAAACCGTGGAATCATAACTACTTTTCTTAGTTGACGGAGTagcttgttgttttgttttgcttccaTTTTGGACTCTTTGATTTCCGTCTGAACATTTTTGGCTTCTCTCTGCACTGCTTTATTGATCAGGGCCACCATTGAGATCTGGTTTTGAGCCAATGTTGAACTTGCATTTGATTTCATGAATGAAGGTAATGAGAGTTTAGGAACTGCTTTAGGTTTGCATTAGCTTAAGAGAGTTTTCCTGCTGTGCTGTGATGCGTTAGACCGCtcggtttataaaaaaaaaaaagcaaatcccAAAGTTGTTTCCATGAGACGTTTGCAGCAAGTGCGTTAAAGGAGAGTTCATCTAAAACTTACAATTTGCTAATTTACTAATAGCTTCACACCATCCAGTGTGTTTTGAATAAGATTTTTAGTTGAAACTGGCTTTTGGtgacattattataattaacagcaacaacaacaactattattattattattattattattattattattaatactaataattattagaataatgtcattattaataataataatagtaataataataacaactacttTTAATGCCATATCTCCGATATTACTtttaaatgttgttgttattgttactataaataataataataataacaaaaacaacaacaacagcaacaacaacaaaaactattaTTAATGCAATTGctccaatattattattattattattattattattaataataataataacaataataataacaccaccaacaacaacaataataataataactataatgctaataataataataataataataataataatgtcatggctttaataaaattattattattattattattattattattattattaataataatgacaaaaacaatacaacaaCTATTATTAATGCAGTTGctccaatattattattattattattattattattattactattattattattattactactattatgaataataataataataataataataataatattaacaacaccatcaccaccaccaacaataataataatgctattattcatattaataacaacaacaacaacaacaacaaccaattaTTAATGCCATTGCtgtaatattatttgtaataataataataataataatgacaccaccaccaccaacaacaacaaccacaataataataattctaatgttataataatagtaataacaacaacaacagctattATTAAAGCTccaatatttgtaatattattaataatactattata
>TCONS_00020287
GACGGCGCAGGGTGAGCTCGAGCATAAGGTGCAGAATAGCAATAAAACGGGGGCGAAAACGCAGGATTTCGCACCGCAAAGCGCGCGCGATACATCCGGATGGAGGCGGCCATCAACCAGTCTTTTGACAGCTCTGTGGGAGTGGGTCTGTCTGTCATGGCCATGATGGAGCAGAATTCAGGCAAGCGTATCCGCAAGCCCTCGCTGCTCTATGAGGGCTTCGAGAGTCCATCTCTGCCTCACGCACCTCCACCCGGACCTCCTCCACCCCTGCAGCCCCCCGTCAGAGACCCCAGCCGACAAGGACGAGCCACCAACCAGCTGCAGTTCCTTCACAAGGTCCTGGTGAAAGCTCTGTGGCGCCATCATTTCGCCTGGCCCTTCCATGAGCCTGTGGACGCGACTCGACTCAACTTACCCGACTATCATAAGATCATTAAGCAGCCGATGGACATGGGCACAATCAAGAAGAGACTGGAAAATAACTACTACCGCGGTGCCAGCGAATGCTTGCAGGACTTTAACACCATGTTCACCAACTGCTACATCTACAACAAGcCTGCAGATGACATTGTGTTGATGGCACAGTCTCTGGAAAAGGTGTTCTTACAGAAGGTCGCCCAAATGCCTCAGGACGAGATCGAGTTGCCCTCTCCTACGCCGAGAGGAAGAGGAAATAAAAGCGTCAAAGCACGGAAAAGCAGAGGAGGCAGTGTAACATCGGCTCACCAGGTTCCAGCCGTGTCTCAGTCAGCCTACTCTCCTTCCTCACCTGAAACACCAGATTCGCAGTTCTCCACCCCTCCACAGACCCTGCTGAGCAGCAGCGGCCCTCCTCCATCTCTGATCACCCCACCACACACTCAACCCACAGCAAAGGTATACGCGCATGCACTCACGCGcacacactttttattaagtgatgtctaacagagcaaggacattttcacagtatttcctatgatttttttcttctggagaaagtcttatttgttttattttggctagaataaaagaagttttccctttttttaactatttaaaggACTATATTGTTAGCCCATCTACAAAGCAGACCACTGTTCACTGTTCagttcatcaagatctacctgagctcaaactcccctctcgccctgcaaactaAAGGCTCAAGGCTCGAAGATCttatgagctcggggctctctcccgggacagcatgccaaacacactttatcaTTAATCATCAGCTCAGTGTGAACTATtgaaactaaattggcagtagtgtatgggtgtttcccgttactggtttgcagctggaagggcatccgctgtgtaagacacatggtggataagttggtggttcattccgctgtggcgacccctgataaataagggactaagccaaacaaaaatgaataaatggatgaatgaatatatacgtgtgtataaataaatatgtgtgtttgta
>TCONS_00020288
ATGGACCTCAGCACTATTAAGAGGAAGATGGATGAGCGCGAGTACAGAGAAGCTCAGCAGTTCAGCGCTGATGTCAGGCTCATGTTCTCCAACTGCTACAAATACAACCCACCAGATCATGATGTGGTGTCAATGGCCAGAAAACTGCAGGACGTGTTTGAGTTCCGTTTCGCGAAGATGCCAGATGAGGATTTGTCCCCAATGCCTATAGGCCGAAACATGGGCATGCTGGGAATGCACCGCTcatcctcttcttcctcctcctcttcctcttcatcctcctcttcctcctcgtcAGAGAGTGAGCCGAGCAGTGACAGCGAGCCAAGCAGCGACAGCAGCCCGAGCTCGGACAGTGAAGAGGAGAGAGCTCAACGCCTGGCTCAGCTTCAGGACCAGCTCTGTACTCAGctgcgAGCGGTGCATGAGCAGCTCGCAGCTCTCTCATCCGGTCCGATCGTCAAACCCAAGAGGAAACGAGAGAAAAAGAAGgacaagaaaaagaagaagaagccaGAGAAGCGCAGAGGAAGTCGAAGTTTGATGAGTGATGAGCGGGACAAACCTGCCAAACTGTCCAAAAGCAAATCCAGCAGAGCCTCACTCTCATCCTCACAGAGCAAGAAGGGTACTACCAAGAAAAGCAGCAAAaaGAACACAAAGAAATCCTCCTCGTCATCTCGTTTTCCAGCAGCCCCAGAGGTCCCGCTGCCTCATTATGACTCTGAGGAGGAAGAGGACGGTCTTCCCATGAGCTACGACGACAAGCGGCAACTCAGCCTGGACATCAACAAGCTGCCCGGAGAAAAACTGGGGCGCGTGGTTCACATCATCCAGTCCAGAGAGCCTTCACTGCGCGACACAAACCCAGAGGAGATCGAGATCGACTTCGAAACCCTCAAACCATCCACACTGCGCGAGCTGGAGAGATACGTGATGACCTGTCTGCGCAAGAAGCCCCGCAAACCATACGtgAAGACTGGAGGAGGAGGGAAGAGTCGAGAGGAGTTGGCTCTGGAGAAGAAGAGAGAGCTGGAGCAGAGACTGCAGGATGTGAGCGGACAGCTCAACTCCACCAAGAAACCCCAGAAACCCAAAGCAGAAAAGGCCAGCGGTGCGGAGCCTCATGCGATGGCATCCCGTCTCAGCGGCAGCAGCTCCAGCTCCGACTCTTCCTCCTCATCTTCCTCCTCATCCTCATCTGACACCAGTGACTCAGACTCCAGGTGA

Function

symbol description
brd2b Acts upstream of or within thrombocyte differentiation. Is expressed in several structures, including head; immature eye; nervous system; ovary; and swim bladder. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2).

GO:

id name namespace
GO:0002574 thrombocyte differentiation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-070220-1 Acts upstream of or within thrombocyte differentiation. Is expressed in several structures, including head; immature eye; nervous system; ovary; and swim bladder. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2).

Ensembl:

ensembl_id ENSDARG00000046087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020286 False 4037 mRNA 0.45 12 48714048 48747788
TCONS_00020287 False 1447 mRNA 0.50 5 48714078 48725396
TCONS_00020288 True 1230 mRNA 0.54 8 48729947 48746341

Neighbor

gene id symbol gene type direction distance location
XLOC_010265 tap1 coding upstream 6003 48678655 ~ 48708045 (+)
XLOC_010264 NA coding upstream 37014 48668314 ~ 48677034 (+)
XLOC_010263 pbx2 coding upstream 70857 48616220 ~ 48643191 (+)
XLOC_010262 ext1a coding upstream 140538 48460873 ~ 48573510 (+)
XLOC_010261 CU183074.1 coding upstream 456918 48257013 ~ 48257130 (+)
XLOC_010267 si:ch73-31d8.2 coding downstream 5876 48753664 ~ 48756697 (+)
XLOC_010268 CABZ01068499.1 coding downstream 257533 49005321 ~ 49017878 (+)
XLOC_010269 plcl2 coding downstream 340910 49088698 ~ 49160181 (+)
XLOC_010270 NA coding downstream 413631 49161419 ~ 49164092 (+)
XLOC_010271 LO018128.1 coding downstream 501881 49249669 ~ 49253574 (+)
XLOC_010260 CU929195.1 non-coding upstream 555625 48158309 ~ 48158423 (+)
XLOC_010259 CR388140.1 non-coding upstream 690640 48023293 ~ 48023408 (+)
XLOC_010258 NA non-coding upstream 714637 47998832 ~ 47999411 (+)
XLOC_010272 CABZ01059142.1 non-coding downstream 799983 49547771 ~ 49547886 (+)
XLOC_010273 NA non-coding downstream 853821 49601609 ~ 49618621 (+)
XLOC_010278 NA non-coding downstream 1487592 50235380 ~ 50260317 (+)
XLOC_010280 NA non-coding downstream 1551892 50299680 ~ 50347897 (+)

Expression


Co-expression Network