XLOC_010276 (nr1d2a)


Basic Information

Item Value
gene id XLOC_010276
gene name nr1d2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50089417 ~ 50111057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020304
GGCGGAGCCGCGGGCGGAAACACGCGCAGCAGAACACTGAGTACCGAGCGCTCGTGCACAGACAGGAGTTCCGTACCATTGTGAGGAGGAGACGCTTCAGATGGAGCACTGActatcagaacacacacacacataaacacactggATCTGAtctatctctcacacacactgcaACTTCTACCTGCTGGAGTTATTACTGTCCGGCTGAATCACAGAGAAACGAAGACTGAAAACATGGAATCGGCAAAGCAAGGAGGTGTGATAGCTTATGTCTGCTCCTCAAGCTCGGCCTCCAGCCCTGAGTCCTGCATGAGTGACAGCTCTGCCAGCCAATCGCCatcctcctctcctcctctgccCACTAAAGCGAGCCGTGCCACAGATCTGTCCATCAGCGCAGGAATGCTGAAACACACACGTGGACACACATCTGATAAAAGCCTCGCTAACAAGAGCTCCATCACcaAGCTGAATGGGATGGTGTTGCTGTGTAAAGTGTGTGGAGACGTCGCCTCTGGCTTCCACTATGGTGTTCATGCCTGTGAAGGCTGCAAGggCTTCTTCAGAAGAAGTATCCAGCAGAATATCCAGTATAAGAAATGCCTGAAGACTGAAAGCTGCACTATAGTGAGGATAAACCGCAACCGCTGCCAACAGTGCCGCTTCAAGAAGTGTTTATCCGTCGGCATGTCAAGAGACGCCGTGCGTTTCGGACGCATCCCGAAGCGTGAGAAGCAGCGGATGCTCCTGGAGATGCAGACGGCGATGAACAACATGATGAACAACAGTCAGCTCCAGCACATGCTGCACGTTTCTCCGAGCGACTCGTCCAGCTCTTCTTCTGCATCTCCGCCGGATTCCCCACGCTCCTCGACGGAGTCGCTCGTCCCGATGGACACCGCCTCGTCCTGCTCGTCCGACAGCGGAGAAGAAGACGGACGATTCTCCTACAGTGCATCTGTTTCCCCGGCCGCATCTGAAACACTCAGCAGGGAAGAAGAAGAGCCGCAGATGCAGTGCTGGAGACGCTCAGACTGTCAAAACACCACAGGACCTTACAGGGAACAGACGGCGCAGCAGTGCATTCGCTTACCGACTGAAAACATGAGTTACTGCAGGAGGAACATGAATGAAGGAGGAAACCGAGCACATCTGGTTTGTCCCATGAGCGCCTCCCCGTTTGTTGACGCCTCCAGACCCGGTCATGAAGTCTGGGAAGAGTTTTCCAGGAGTTTCATCCCTGCCGTTCGAGAGGTTGTAGAGTTTGCTAAGCGGATCCCAGGCTTCCAGGAGCTTTCCCAACACGACCAGGTCAACCTGCTGAAGGCCGGCACATTTGAGGTGCTGATGGTGCGTTTCGTGCCTCTATTCGACGTGCAGCAGCGGACTGTGAGTTTCATGAGTGGCAGAAGGTACAGTGTGGACCTGCTGCGCTCCATGGGGGCCGGAGAGCTGCTCAACTGCATGTTCGAGTTCAGCGAGAAACTCGCCGCTCTGCAGCTCAATGACGAGGAAATGAGCCTCTTCTCTGCTGTGGTGCTCGTGTCTGCAGACCGATCAGCAATTGAGGACGTTGTCGGTGTGGAGGCCCTTCAGGAAAGCCTAATCCGAGCCCTGAGGAACCTAATCATGAAAAACCACTCAAACGAATCCTCCGTGTTCACCAAACTGCTCCTAAAACTGCCTGAGCTGCGATCGCTCAACAACATGCACTCCGAGGAGCTGCTCGCCTTCAAAATACAACCCTAAACAACCAACCTGCGCTCTCCATTTTACTCTTGAATGTATTTAACAGGCTTTTATACTGAATAACGACGCATTCGTACGCTATTATTAGATATTGTGATATTTGCTAATGACGCACAAGCGAAAGCGAAAAacgtttgttttttaaaacacatgAAAGACTCTTCCTCTTTTATTTATGTGCAATAGCTGCTAACGCATGGCTAGTCGTATAAGAGCAGCTTTACGTCGTGTTTGTCCAGAAGAGTTTGTATTGATTAAGGCCAGACGCTGCAGGCTTTTTAGGCTTTTCATAAATGCCAAGTAAACATGCacttaaaaaaagcataaaaaatataaactttatctttttttgcactttttgtaaATTTCAGTCAcaatacatattttaagacaatacatattttacatattttttcatCTCAACTAAGCCACAAATTGCTTTTTTAGCACTGTTTATGTACATTAAACATCACAGTTTTGcaggaactactttatctgtgcatttAAATATCATCACGTTTTAGAATGCTCCAAATtggccggaactactttatctgtgcagTAAATAACATCATGTTTTAGAATGCTCCAAATtggccggaactactttatctgtgcatttGAATAGCAGTCGACATTTAATTAGCAGTCGATTTTAAAATGCTCAAAATCTGCAGGTACTACTTTAAATGTGCATTTAGGAAACAGCACATTTAAGAATGCCCAAaatctgccggaactactttgTCTGTGCATTTAAATAGCAGTCTATTTTAGAATGCTTAAaatctgccggaactactttatctgtgcatttAAGTAACAGCACATTTTAGAATTCTCAAAATtggccggaactactttatctgtgcatttaaaaagcagcacattttaaatgctaaaaattgGCCAGAATTAATTTATCTGTGCATTTAAATAGCAGTCGATTTTAGAATACTCAAAATTGGCCAGAACtactttatttgtgcatttaaacagCAGCACATTTAAGAATGCTCAAAATTGGCCGGCACTAATTTATCTATGCATTTTAAACAGCAGCACATTTTAGATTGCTCAAAATCGGCcagaactactttatctgtgcatttAAATAGCAGTTGATTTTTGAATGCTCAAAATCTGCCGGGactactttatctgtgcatttAAATAACAGCACATTTTAGAAAGCCTAAAAtttgccggaactactttatctgtgtatttaaataataacacATTATAGAATGCGCTAaatctgccggaactactttctctttgtattttaataatagtacATTATAAAATGCGCTAAATCTGcgggaactactttatctgtgcatttAAATAGCAGTTGATTTTAGAATGCTCAAAATGGTCTGGAACTAATTCATTTGTGCAATTAAACAGCAGCACATTTTAAAATGCTCAAAATCTGCCAGAACTACTTCATCTGTGGATTCAAATCATAGCACATTTTAGAAtgcccatcagccaatcagaagcaagcattcaacagccctgTAGTATAAtgatagctttttatttttaaccctTTTTTTCGCCTGCAGTGTCTAGCCTTAATGGACTGATTATGTGttgttgtgtatataaatatCTGATGTCAGTTTTCTGAATGTATGTCAGCATGTCGGCATTGTTTTCACCTGTATAACAGGGCTTTTGCACGAGGTGTCGAGGAACAGGTGCGTTCGGCACCATAAATACGGAGCACAGACGGAAAACATCCGCCTGcccaatttataatttataagcGGAGTCACTTTAAAAGCCGTTTTTTTATATATCGACCATGTATTAAGAGGTGTTATAAGTCTTCCATTATGCAAACGTGTATAGTGGACCTGAACAAACGTACTGAAAGAAATGGAGTTTATTTATGGCTGTTTGTACAGAttgccttattattattattacttttgtttCTGACGTTTCTCTGGAATAACGGTGGAGCAGGGAATCCATGTTAAAGTCCCAGTTATTTTGGGATGCACTTCTTGCGGTTTACTCTATGCATATGGAAACAGTGTGACATTATGGACATTTCTCAGCCTGTAATCCAATAGGATAAAGATATACTGCTCCCCTATTCAGTTTTGGTGTGTCCATGTgtttttttggttgtttgtttCCTTATAAATAACAGTGCAGTATGTATAGTTGTGTATATCTATTTGAAATATATCAttatgaaaagaaaatcaataaatatttactTGTCA
>TCONS_00020305
AGGAGGTGTGATAGCTTATGTCTGCTCCTCAAGCTCGGCCTCCAGCCCTGAGTCCTGCATGAGTGACAGCTCTGCCAGCCAATCGCCatcctcctctcctcctctgccCACTAAAGCGAGCCGTGCCACAGATCTGTCCATCAGCGCAGGAATGCTGAAACACACACGTGGACACACATCTGATAAAAGCCTCGCTAACAAGAGCTCCATCACcagtgagtacacacacacacacacacatacaaacacagtgAGCACATCTGACAGGATTTACCGACTCTGACGTGTGTTTTCTAGAGCTGAATGGGATGGTGTTGCTGTGTAAAGTGTGTGGAGACGTCGCCTCTGGCTTCCACTATGGTGTTCATGCCTGTGAAGGCTGCAAGggCTTCTTCAGAAGAAGTATCCAGCAGAATATCCAGTATAAGAAATGCCTGAAGACTGAAAGCT
>TCONS_00020306
AGGAGGTGTGATAGCTTATGTCTGCTCCTCAAGCTCGGCCTCCAGCCCTGAGTCCTGCATGAGTGACAGCTCTGCCAGCCAATCGCCatcctcctctcctcctctgccCACTAAAGCGAGCCGTGCCACAGATCTGTCCATCAGCGCAGGAATGCTGAAACACACACGTGGACACACATCTGATAAAAGCCTCGCTAACAAGAGCTCCATCACcaAGCTGAATGGGATGGTGTTGCTGTGTAAAGTGTGTGGAGACGTCGCCTCTGGCTTCCACTATGGTGTTCATGCCTGTGAAGGCTGCAAGggCTTCTTCAGAAGAAGTATCCAGCAGAATATCCAGTATAAGAAATGCCTGAAGACTGAAAGCTGCACTATAGTGAGGATAAACCGCAACCGCTGCCAACAGTGCCGCTTCAAGAAGTGTTTATCCGTCGGCATGTCAAGAGACGCCGTGCGTTTCGGACGCATCCCGAAGCGTGAGAAGCAGCGGATGCTCCTGGAGATGCAGACGGCGATGAACAACATGATGAACAACAGTCAGCTCCAGCACATGCTGCACGTTTCTCCGAGCGACTCGTCCAGCTCTTCTTCTGCATCTCCGCCGGATTCCCCACGCTCCTCGACGGAGTCGCTCGTCCCGATGGACACCGCCTCGTCCTGCTCGTCCGACAGCGGAGAAGAAGACGGACGATTCTCCTACAGTGCATCTGTTTCCCCGGCCGCATCTGAAACACTCAGCAGGGAAGAAGAAGAGCCGCAGATGCAGTGCTGGAGACGCTCAGACTGTCAAAACACCACAGGACCTTACAGGGAACAGACGGCGCAGCAGTGCATTCGCTTACCGACTGAAAACATGAGTTACTGCAGGAGGAACATGAATGAAGGAGGAAACCGAGCACATCTGGTTTGTCCCATGAGCGCCTCCCCGTTTGTTGACGCCTCCAGACCCGGTCATGAAGTCTGGGAAGAGTTTTCCAGGAGTTTCATCCCTGCCGTTCGAGAGGTTGTAGAGTTTGCTAAGCGGATCCCAGGCTTCCAGGAGCTTTCCCAACACGACCAGGTCAACCTGCTGAAGGCCGGCACATTTGAGGTGCTGATGGTGCGTTTCGTGCCTCTATTCGACGTGCAGCAGCGGACTGTGAGTTTCATGAGTGGCAGAAGGTACAGTGTGGACCTGCTGCGCTCCATGGGGGCCGGAGAGCTGCTCAACTGCATGTTCGAGTTCAGCGAGAAACTCGCCGCTCTGCAGCTCAATGACGAGGAAATGAGCCTCTTCTCTGCTGTGGTGCTCGTGTCTGCAGACCGATCAGCAATTGAGGACGTTGTCGGTGTGGAGGCCCTTCAGGAAAGCCTAATCCGAGCCCTGAGGAACCTAATCATGAAAAACCACTCAAACGAATCCTCCGTGTTCACCAAACTGCTCCTAAAACTGCCTGAGCTGCGATCGCTCAACAACATGCACTCCGAGGAGCTGCTCGCCTTCAAAATACAACCCTAAACAACCAACCTGCGCTCTCCATTTTACTCTTGAATGTATTTAACAGGCTTTTATACTGAATAACGACGCATTCGTACGCTATTATTAGATATTGTGATATTTGCTAATGACGCACAAGCGAAAGCGAAAAacgtttgttttttaaaacacatgAAAGACTCTTCCTCTTTTATTTATGTGCAATAGCTGCTAACGCATGGCTAGTCGTATAAGAGCAGCTTTACGTCGTGTTTGTCCAGAAGAGTTTGTATTGATTAAGGCCAGACGCTGCAGGCTTTTTAGGCTTTTCATAAATGCCAAGTAAACATGCacttaaaaaaagcataaaaaatataaactttatctttttttgcactttttgtaaATTTCAGTCAcaatacatattttaagacaatacatattttacatattttttcatCTCAACTAAGCCACAAATTGCTTTTTTAGCACTGTTTATGTACATTAAACATCACAGTTTTGcaggaactactttatctgtgcatttAAATATCATCACGTTTTAGAATGCTCCAAATtggccggaactactttatctgtgcagTAAATAACATCATGTTTTAGAATGCTCCAAATtggccggaactactttatctgtgcatttGAATAGCAGTCGACATTTAATTAGCAGTCGATTTTAAAATGCTCAAAATCTGCAGGTACTACTTTAAATGTGCATTTAGGAAACAGCACATTTAAGAATGCCCAAaatctgccggaactactttgTCTGTGCATTTAAATAGCAGTCTATTTTAGAATGCTTAAaatctgccggaactactttatctgtgcatttAAGTAACAGCACATTTTAGAATTCTCAAAATtggccggaactactttatctgtgcatttaaaaagcagcacattttaaatgctaaaaattgGCCAGAATTAATTTATCTGTGCATTTAAATAGCAGTCGATTTTAGAATACTCAAAATTGGCCAGAACtactttatttgtgcatttaaacagCAGCACATTTAAGAATGCTCAAAATTGGCCGGCACTAATTTATCTATGCATTTTAAACAGCAGCACATTTTAGATTGCTCAAAATCGGCcagaactactttatctgtgcatttAAATAGCAGTTGATTTTTGAATGCTCAAAATCTGCCGGGactactttatctgtgcatttAAATAACAGCACATTTTAGAAAGCCTAAAAtttgccggaactactttatctgtgtatttaaataataacacATTATAGAATGCGCTAaatctgccggaactactttctctttgtattttaataatagtacATTATAAAATGCGCTAAATCTGcgggaactactttatctgtgcatttAAATAGCAGTTGATTTTAGAATGCTCAAAATGGTCTGGAACTAATTCATTTGTGCAATTAAACAGCAGCACATTTTAAAATGCTCAAAATCTGCCAGAACTACTTCATCTGTGGATTCAAATCATAGCACATTTTAGAAtgcccatcagccaatcagaagcaagcattcaacagccctgTAGTATAAtgatagctttttatttttaaccctTTTTTTCGCCTGCAGTGTCTAGCC

Function

symbol description
nr1d2a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human NR1D2 (nuclear receptor subfamily 1 group D member 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040504-1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human NR1D2 (nuclear receptor subfamily 1 group D member 2).

Ensembl:

ensembl_id ENSDARG00000003820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020304 False 3995 mRNA 0.43 8 50089417 50111057
TCONS_00020305 False 450 lncRNA 0.51 2 50100420 50101911
TCONS_00020306 True 3081 mRNA 0.44 7 50100420 50110394

Neighbor

gene id symbol gene type direction distance location
XLOC_010275 ube2e2 coding upstream 10948 50006145 ~ 50078469 (+)
XLOC_010274 rab5ab coding upstream 428011 49647402 ~ 49661406 (+)
XLOC_010273 NA coding upstream 470796 49601609 ~ 49618621 (+)
XLOC_010272 CABZ01059142.1 coding upstream 541531 49547771 ~ 49547886 (+)
XLOC_010271 LO018128.1 coding upstream 835843 49249669 ~ 49253574 (+)
XLOC_010277 si:ch211-231m23.4 coding downstream 52307 50163364 ~ 50164281 (+)
XLOC_010278 NA coding downstream 124323 50235380 ~ 50260317 (+)
XLOC_010279 hamp coding downstream 178859 50289916 ~ 50292583 (+)
XLOC_010280 NA coding downstream 188623 50299680 ~ 50347897 (+)
XLOC_010281 IGLON5 coding downstream 323611 50434668 ~ 50824469 (+)
XLOC_010270 NA non-coding upstream 925325 49161419 ~ 49164092 (+)
XLOC_010264 NA non-coding upstream 1412383 48668314 ~ 48677034 (+)
XLOC_010261 CU183074.1 non-coding upstream 1832287 48257013 ~ 48257130 (+)
XLOC_010282 NA non-coding downstream 351187 50462244 ~ 50463641 (+)
XLOC_010283 NA non-coding downstream 358827 50469884 ~ 50472417 (+)
XLOC_010284 LO018415.1 non-coding downstream 396119 50507176 ~ 50507295 (+)

Expression


Co-expression Network