CI01000063_00669808_00687564


Basic Information

Item Value
gene id CI01000063_00669808_00687564
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 669808 ~ 687816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_00669808_00687564.mRNA
GACTCCGTATTGCTTGAAAAAGAGCATTTGCAGGTCTATCTCCGTGTACGTCCGTTCACTTCTGCAGAGACAGCAGAAGGAGAATCGCCGGAGTGTATTTCAATCGAGCCTCCAGATACTGTGATTCTTAAGGCACCTAGAGCATCTCTGACAGCCAGACACAGTGAGAGATTCGGCCCACAGCTGGCACAACGATTTCAGTTCTCACAGGTGTACGGTCCAAAAACAACTCAAAGACAGATATTTGATGGAACAACTAAAAGCCTTGTGAAAGAAGTCTTGGAGGGAGGGAATTCCTTGATCTTTACATATGGAGTTACCAATGCTGGGAAGACGTTTACTTTTCTTGGCCCTGAATCAGATGGTGGAATTCTGCCCAGGTCATTGAATGTGATCTTTAACAGCATAGAAGGCAGAATTTATTCTCAAAATAACATCAAACCTCACAGATGTGTCGACTTTATGAGACTGACTAAAGAGCAGCAGGATGAGGAAGCTACAAATAAGAGAAACCTTCTTCGTAGATTTAAAGATAATGACTCCCAAAAAACACTGTCCAGCATGTCCAGCTCTAGTTGTTTATCATTTGAAAGTTCCACTTCTAGTGACACGAATGCGGACAGTGTCTGTTTGGATGAGACCTCTTATGTTAAATACTCAGTGTGGGTCTCCTTTTTTGAAATCTACAACGAAAGTGTCCATGATCTGCTTGATCTTGTTTCAAATGGCTCTCACAGAAGGAGTGTTTTGCGACTAGCCCAAGATGTTAAAGGCAATGCTTTTGTCAAAGACCTAAAATGGTTTCAAGTTAACAGTGTAGATGAAGCATTAAAAATTGTGAAAATTGGAAGAAAAAATCAAAGTTTCTCATCCACAAAGCTCAACAACATCTCAAGCAGAAGGTTGTCATTATGTGATTTGGCTGGATCTGAACGATGTGCAAAGACTCAGAACCGAGGAGACCGCTTAAAAGAAGCTGGAAACATCAACACTTCCTTGTTAACTCTGGGAAAATGCATCAACGCTCTGAGGCTCAACCAAACACAATCCAAGTTTCATCAGCACGTTCCCTTCAGAGAGAGCAAGCTCACACATTATTTGCAGGGTTTTTTCTGTGGTCGTGGAAAAGCCTGCATGATTATCAACATAAACCAGTGTGCCTCAATGTACGATGAAACCCTGAATGTCCTTAAGTTCTCAGCAGTGGCTCAGAAGGTAGTGGTCCTCAACCCTAAACCAGCTCCTAGCGTTGTGCTCAAGAGATCTGCCAGAGATGTGTCTATGATAATCAATAATGCTGACAAGAAAGATTGGACCAGGAGAAGCTCACTCATGGGCTGGGAGATGAGTCTAGAGGATGTGCAGGAGGATGAAGATGATGAAGAAATTGGTGAGGAAGATGTAGAGAGTGGCGATGAGAGCATGGAGGACAACACTGTGTTAGAGGCTGTGGAAAGTCAAGAGCTGTGTGAGCTTCAGGTGAAAATTGAAGAGCTCAAAGAGAAGCTGTCCAAAGAGGAGTCTGAAAAATTAACTATGGAATCTCGTATTCGTGAAGAAGTCACCACAGAGTTTATGGAGCTGTTTTCTAATATGGAAAAAGACTACAATGAACGTCTCCAAAGAGAGAAAGAAATAGTTGAGGAAAGAGCAGAAAGGAGGCTGGAGATACTGAAGAATCTGGTGAACAGAACTATTGGGGAAATGGCCACTGTTAGCACTGACGAGAATGCAGCAAAGGAGGCTAAGATTGAGCTTTTGGACAGCATGATTGAAGCTATGCGAGATGATCTAGCTAAGATAAAGGGAGATGCAGAGGCAGTAACCATGTGCCTGACCAATGTCCCTGAATCACCTGGAACAGTCAGTCATCTGAGAACACAGCTGGAGGAGATGAAAGAGGAGCTTCTCAAAAGCCAACAACTTCTCAGTCTTAAAACTAAAGAGTTTGAAGCAATGTGTGTTCAGGCACAGGAATCAAATGAGCAGCTTCTCCAGGCAAATAGGAATTATGAAAACCTGAAAGTGAGATGTCAGGAACTCATGTTAATCTGCCAGGAGAAAGATGACATGGTCTCTACATTACAGACTGCTTTGGATCAAAATGTGGAGGCAACTACTAAAGATAGGGACTTCATTAACAATATCAAAGAAGAAATCCTACATTTCAGAAACAACTGCAAGTGTTTGCTGAATGAAGACTCTGAACATAGAGAGGAGGAAATGACAAGTCAAGAAACTCAACAGCTTCTGCAAGAACTGAAAATGAAAGATGACCGGCTGAATGAACTTAACCTTGAGAACTGTTCACTTGAAAAAACAGTGTGTGATCTCTCTGATAGACTGGCAGAGCTGACTCGTGCACATGAATCCACTGTGGCGATGGAGAGAGCAGAGGTCAGCAAAGTCACAAATGAGAACAAGGCTCTTGCCAATGAGTTACATGTAATCCAACAGGCAGCCAATGAGATGAGCTCAAAGCTCAAAACTATCCAGATGGAATTGAGCACTCAGACAAAGATGGCCAGTGAGCTTTCAGAAAAACTTGATGCAGCCAGAGCTCTGATTAAACAACATCAAGCAGAGTCTTGCAGTCAGTCCAAAACCATTGAATCCTTAATGATTGAGGCAGATCATTTGCGTCAAGAACTCAGTGCCCGCCAGCTCTCACATGACAAAAACGAAGCTGAATGTGAGATGATGGTGGAGTTATCTCAGGAGAAGAGCAGACAGATCAGTGACCTGGAGCAGGAGGTCAGCCAGACCAGAGCGAACGTGTGCCAGCTGGAAGAGCTCTGCACTCAGCTTAAATATGAGCGAGATGCCCAGGCACAGGAATACCAGAGCCTACTGAGCCGTTATGAAGCTCAAAAGTTTGTCGTGGCCCAAATAAGAAGCAACTCTGAGCTCCTGGAAGAGCTGACCGCTCTGAAACATCAGCAGGGAAGGAAGGAAGAACAAGAGCAAGACTCCAGAGATGATTGCTGGAAAACTCTGCAGGACAAATTCATGCAAACGCTGAGCAAACTGAACCAACATGAGGAGGTTCTGAATGTAGTAAGAGCGATTGTAGAAAATGAGATCTCTAAGGCAAGAGATGAGGCCAAGAGGAGAATAACTGCAATGGAGAATGATCTGGCCCATAAAGATGCAGAACTAGAGATCAAAGCCCAAGAGCTTTTGAAGTCGAGAGAACTTGTGACCGATGGACTTGATAAAATCAAGATTATGAGTTGCAAGTTGCAGCAGGTGGAGAATGAGCGATCTGATGTCAGTGATCAGTTATGTGAGGCTAATTTGCATAAAGAACAGTTAGAGAAACAGATTTTCATCTTGAGTGAAAAAAACAAAATGTTTCAGCAGAGACCATGTGAAGCGGAGGAGATGAGGGATCAGGCTGGACACAGATTGAGCAGCACAGAGCAGACTATTGATCCATTGCAGACTGTGCAGTCAAACCATGTAATAGAAGAAGAAAACATACAGCCTTTCAAAACAACCTGTCAAGATCTGTTGGCAGAGCAGAAGCTGATTGAGGAGACGTGTGTAAACTTAAATAAAGTGTACACACAGACAGATGAGGAGGAATTGCTGGAGGCCAGACTGAATGAGAATGAATCCATAACTGAAGATCTTGCAAAACTGCAGGAGATGTATCAGAAACCAAGTGTTGGTTTCTCTGATAAACCCCAGCAAGAGGAACAGAGAGCCTGCAGACCTGCAGAAAGCACAAAGCAGCCTAATGAGGAGCAGGGAAAGGGGCTGGATGGAGCAGCCATGGGGGAAGAAGAGAGAGCGGCCCAGGCAGCAAGGCAACTAGAAGGCGACCAACAGGACAGGCTGCAGCTGGAGCTGAAAGTTGACAGTCCCAAACAGACTTCAAACGTGAAGACAAAAAATGAAGGCGATTCATTTAGTCCAACACAAGAGGTGGACTCCTCTGTCCTTTCCACAAAGAGCCTCAGAGATGAGCGCTTCCCCAAACCTGAGCTAGAAATCAGCTTTACACCACTTAAACCTGACCGAATTAATGTCAGGAAACCGGGAGAAGAAGAATCTGTCACGATCAAACTCCGACGTACAGCCAGAAAGAGAAAGAGCCCAGAGATGCAGAACTCAGTGGAGTCAGAAAATCGGAAAAACCGACGGCTGAAGGTGAACAACAAGGAAAACTTGCAGTTTGTTGAGACTCCCACAGTGCAAGGAAAAAAGGTGAGTCAATTAAAGCAGAAAGACTCTCCTGCCAGCCTGAAAGGTAAAAAAGACGGAGCCCTCCAGAAGATTGGTGACTTCATCCAGAGCTCTCCAACCCTCTTTGGGAGCAAAGCCAAGAAAATCATGAGCATGGTGAATGTGAAATCCCCTGAACTGCCAAATGCTTCTGTAAACAACAAACCCAAGAGATCCAAACGAAAGCTCTTTAAGACTCAGGTTTCCTCCCCGCTGGACATCCCCTCTCATCCTGTAAGTAGCGTTTCTTTTGCAGAAGTCATGGAAGAATGAATCAAATGCATGTAGGAATGAATGAGAAACATTCCTTATGTTAGCGGTAATGTTACAACAACTGTGTAACATTTTATTTAAGCCCCCAAGAGACAAAAAAGGTTGATAGTCTATTTGTTTTTAAAGCTTTTCAATGTTAATATAGGGTGAATTCAGGGTGATTGGGACACTATTCGCCATCGAGATGAATTGGAAAAAGTGTCCCAATCAACCTTTATTCAACCTACTCTGAACTAATGGGCACTAGATGTA

Function

NR:

description
Sb:cb152 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_00669808_00687564.mRNA True 4755 mRNA 0.44 27 669808 687816

Neighbor

gene id symbol gene type direction distance location
CI01000063_00659693_00662317 NA coding upstream 7383 659630 ~ 662425 (+)
CI01000063_00562850_00563761 PPP1R3CB coding upstream 105886 562750 ~ 563922 (+)
CI01000063_00533801_00557577 MPP3B coding upstream 112102 533801 ~ 558334 (+)
CI01000063_00478894_00523263 NA coding upstream 146447 478894 ~ 523361 (+)
CI01000063_00473977_00476385 NA coding upstream 192870 473977 ~ 476938 (+)
CI01000063_00737387_00744421 PANK1, PANK1B coding downstream 49268 737084 ~ 745002 (+)
CI01000063_00768000_00776500 SLC16A12B coding downstream 79067 766883 ~ 777761 (+)
CI01000063_00811088_00811849 CH25H coding downstream 123065 810881 ~ 812197 (+)
CI01000063_00839103_00843726 ACTA2, ACTC1A, MGC53823, ACTG2, ACTC1, MGC75582, ACTA1, ACTC1.L, ACTBL2 coding downstream 150697 838513 ~ 843762 (+)
CI01000063_00861534_00863874 ANKRD22 coding downstream 173163 860979 ~ 864105 (+)
G262053 NA non-coding upstream 14147 655436 ~ 655661 (+)
G262043 NA non-coding upstream 40698 628910 ~ 629110 (+)
G262042 NA non-coding upstream 41235 628272 ~ 628573 (+)
G262037 NA non-coding upstream 44999 624559 ~ 624809 (+)
G262034 NA non-coding upstream 48376 621117 ~ 621432 (+)
G262060 NA non-coding downstream 22294 710110 ~ 710554 (+)
G262135 NA non-coding downstream 68571 756387 ~ 764451 (+)
G262080 NA non-coding downstream 101646 789462 ~ 809644 (+)
G262150 NA non-coding downstream 141861 829677 ~ 829953 (+)
G262152 NA non-coding downstream 143644 831460 ~ 831718 (+)
G261984 NA other upstream 2426 665800 ~ 667382 (+)
G261700 NA other upstream 395358 252412 ~ 274450 (+)
G262194 NA other downstream 456055 1139352 ~ 1145007 (+)
G262423 NA other downstream 1553592 2241408 ~ 2242965 (+)
G262436 NA other downstream 2025799 2713615 ~ 2714517 (+)
G265391 NA other downstream 5225967 5913783 ~ 5919029 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004610 kif20bb coding NC_007123.7 CM002896.2 16452575 ~ 16479291 (+)