CI01000063_01168018_01168572 (BHLHA15)


Basic Information

Item Value
gene id CI01000063_01168018_01168572
gene name BHLHA15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1165782 ~ 1169391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01168018_01168572.mRNA
TTATAAAAAGGGTGGTTCTCTGCACACATCTACACTTGTACAAATAAAGGTTCCAATTAGAAGAGTTTAAAAGTCTGATAGAGGTTCCACAAAGGACTTTTTATTTTCTAACATTTTGTTCTTTAGACAACCACGGTTCTGGTGCTTTATATATCCCCACTAGATACAGGCTCAAGTAATATTTTTGTTTTTGACACAAATCAGAAACATGTTCCTAGAAAGTCATACTATAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGTGTTAGTTCACCCAAAAATGAAATTTCTGTCATTATGTACTCGCTCTCATGTCGTTCCAAACCCATGAGAACACAAATTAAGATATTTTTGAAGAAATCCGAGAGGTTTTTTATCTCCCATAGAAAGCAATGAAATTACCACATTCAAGGTCCAGAAAAGTAGTAAAGACATCGTTAAAATAGTCCACGTGACTACAGTAATTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATCAATTTGAGCTGTTGTCATACGCAGTTGACGTAGACGTCAGGCTTCCGTGTTTACATCCGAACGCCGGCTCAGTATTGGCCGACACCTGTTCACGTGAGCAGCACGACGCATGCGTGTGATGCTCACGCAGGAGCCAGCCAATAATGAGTTGGCATTCTGACGTAAACACGGAAGCCTGCATTGCGTTCACTACGTCAACTGCGTATGACAACAGCTCAAATTGTTAAATAAAGTTATTTTTGTTTTGTTTTTTAAGGCTACTTAATGACAAAAATTTCATTTTTGGGTGAACTAACCCTTTAATCACAATCAATTTTTAATCTATAAATGTTTCTGCCAAATTCAAAAAAAAAAAAAAAAAAAAAACCTGAAAGGAGTTAATTTACATGTACCTCTTGTAATATATGTTCCCTTGGTTTAGAATAATTGCTTTAATAAAGAATGTAGAAACCAATACTGGATCCTAATGTCAAAAAGGGAAATAAATAAAAAATACTATGATATAATAATATTAACAAAAATAACAATAATGTCCAAAGAACCATATAGCACAAGAAGGCATCACAGTAAAGTAAAGCTCTGAAAAGTGCTTAATGATATGTATGCAAGGCCCATTTGAAATGCAAAGGTCTAGGCAAATATTACGAAGTGTTTTAACTTGATAAAGTGCCTTGGAAAGAGTAGTAAAACATATCAATTCAGTCATCTGCAGGAAACACCATTGCAATGTCTGCATATTTCTTTCTTGCAAAAATCAAAAAAGCTACATAAACGTATTAACGATTATCAATGGAAAGTCCCCACTAAATGTAATGTACGAGAGTATGTGATTTGCATTGTTAACAGCGCCACAGCTTTAAAATAAAAGTATAGTGCTTAAACCACCTGCAGCAACAGCAGCAGTATCACAGACCGCTTTTATCATCATCTGAAAGCGTGAACAAAGTTTCAGATCGCTATTTCCGATGCTTGCGCCAGCTCATGGGTGACTCGAGAAGAAACGGGTCCCTCCTTTGATTGGCCACAAAAGCGCTACGTGGACATCGAGCAGCAACAGGTAGAGCGCGTGACCGTTATCATTTCATTCTGACTGCGGCTGTCAGGACGACAACAGCGCTTCACGTCAGCTAATTATCGCTCTCCGCAAGGCTCTTATCGCGCAAACATCTTCTCGAGTTTGGTGGAAATCTATTTCGAGGTAAGCAAAACTTTTTTCCCCCCGAAAGCAGGGATGATTGATTGGCAGCTTTTAAGACAGCAGCGACAACGTGTAGTGACGATGTGGATGTTGCTCACTTGATGAATCTAGTTCACTAGCATGGCTTAATGTTATCAATTTCATTTTCAGTTTATATATATATATTGTATTATAGAATTTTTTTTTTTTTACAACTAAACTCAAAGTTTTTAACTATTAAACAGACTAGTTAAACAGGGATATACGAGATGCTAGTTTAACTATAGGGAAGAATATTACACATTATCCAGAAGTATGTCTTCAAATCTAATCATTTGCTGCAGGATGCTAAAACAAGTTTAACCTTACTTATTCTTCATATATGCCAGCATATTTTTCAGTATCCACATTTTTAAAGCCATCTATACTGATATATGATGTTATTTTTGCATGTTCATTTCCTCAAATCAAATGTGAATGATAATATTCTAGGGCCTACACCAGGGTGTGGGTGAGTCAAGTATGAAGTCCAAAGGAAAGGGGTCAAAGCGGGGCAGACAGTCTTGGGCAGAGCAGGACGACCCAGACTTTACGCTGGAAACCGAGCCAGGTTCCAGCGAGCAGGAGGGTTCAGAGGCGTCCGTGAGGCTGGGTGGGACGTGGAGAACACTGAGGGGCGAGGGGCATGGTCGTACCCGAGTGGGCGCGCGTCGCAGGCGCCAGCACGGCAACGCTAAGGAACGCAACGTCCGCAGGCTGGAGAGTAATGAGAGAGAGAGGCAGAGGATGCACAAACTCAACAACGCCTTTCAGGCCCTACGGGAGGCCATTCCTCATGTCAAAACAGACAAGAAACTTTCCAAGATTGAGACTCTCACGCTGGCCAAGAATTACATCAAGGCCTTAACCACCATCATCCTAGGCATGTCGAATGCCTGCCTGCCTCACGCAGAAAGTCACATGGAGACTAATGCCTCCCGGCTCCTGCAGTGCTATCAGCAGCATCTACAGGAGGAGGGAGAGGAAGACCTGTCCAACTACCTGAGCCACATTCACAGCTTCAGCCAGGGCAGCTAACACACACTGCCACATAACAGACTCAGTGAGCACTAAATGACAAGTGTAAATATGTGCATGTTACATTCATGATGAATACCAGCTCCTAAAACAAACAAAAAGGTCCGTTCGAGTTTACAAGTTAAAGCTGGTCCATAAATAAGGCTCATTTATGTACAGAATATGCACAGTTTATGTAACAACATGTTGCCCACAAACAATGTGGATGTTATTTGACATCATCTAGCTAAATTGTTAGCCAGTGACTTTTTGGATTATGAAGGGACACAATCTACTGGTTCTTAATGTAGTTAACCCAAAAAATGTCACAAAAGAAGATGCTCATTGTGAAAGTTAATGGGGTCCATAACTACACCGGACCCCCTGACTTTCATTGTTTGGACGATAAATATCATCTTTTGTGTTCTGCAAAATAGTCATAGAACTCTTACAGCTTCATACAGTCATAAAGCTTTGGAACATTTTTGGGTGAACTATCCTTTTAATAGGGTAAGCATTTAAAACAAATGCAAAGCTGTGGAACAGATTTCATATTTATTGAGGACACGAACCATGCACATATGACACTGAGAGGATTTTACTGTACTCAAATAATGACTCCACTGTCCTTACCCTGTTATCTGTCTACATTTAATAATTTAAAACTATATTATCTTTTTTTTTTTTCTCTCATGCCTGCATATAATTTCTTTATATGTACAGAAGCAACCTTAAATAATGCCCATAAAGGATGTCACAATGCCATTTCACATTAGAACCATTATTACTCATAAATAATCCAAATTTATACATCCACATGTACAACATAGCAGAATAGGA

Function

symbol description
bhlha15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within exocrine pancreas development. Predicted to be active in nucleus. Is expressed in exocrine pancreas; hatching gland; hindbrain; and polster. Orthologous to human BHLHA15 (basic helix-loop-helix family member a15).

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process

KEGG:

id description
K08040 BHLHB8, MIST1; class B basic helix-loop-helix protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01168018_01168572.mRNA True 3610 mRNA 0.39 1 1165782 1169391

Neighbor

gene id symbol gene type direction distance location
CI01000063_01095386_01102295 NA coding upstream 63487 1095386 ~ 1102295 (+)
CI01000063_01089059_01094639 PMS2 coding upstream 70760 1089059 ~ 1095022 (+)
CI01000063_01047868_01059684 CYTH3, CYTH3A coding upstream 106057 1047868 ~ 1059725 (+)
CI01000063_01008945_01013177 ATAD1, ATAD1B coding upstream 152233 1008945 ~ 1013549 (+)
CI01000063_00889956_00941586 RNLS coding upstream 224042 889956 ~ 941740 (+)
CI01000063_01219046_01224170 NA coding downstream 49509 1218900 ~ 1225323 (+)
CI01000063_01240976_01328455 TRRAP coding downstream 69991 1239382 ~ 1328688 (+)
CI01000063_01384163_01441190 FAM20CB, FAM20C coding downstream 213807 1383198 ~ 1441349 (+)
CI01000063_01456382_01458080 NA coding downstream 286700 1456091 ~ 1459374 (+)
CI01000063_01500129_01504142 NA coding downstream 330646 1500037 ~ 1504470 (+)
G262194 NA non-coding upstream 20775 1139352 ~ 1145007 (+)
G262191 NA non-coding upstream 30264 1132990 ~ 1135518 (+)
G262189 NA non-coding upstream 45906 1118933 ~ 1119876 (+)
G262185 NA non-coding upstream 64428 1101147 ~ 1101354 (+)
G262174 NA non-coding upstream 187768 977802 ~ 978014 (+)
G262211 NA non-coding downstream 26977 1196368 ~ 1198837 (+)
G262266 NA non-coding downstream 339888 1509279 ~ 1509628 (+)
CI01000063_01533946_01534527 MSRB1B non-coding downstream 364462 1533853 ~ 1535375 (+)
G262101 NA non-coding downstream 485811 1655202 ~ 1656049 (+)
G262104 NA non-coding downstream 512828 1682219 ~ 1686364 (+)
G262060 NA other upstream 455228 710110 ~ 710554 (+)
G261984 NA other upstream 498400 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 607448 533801 ~ 558334 (+)
G261700 NA other upstream 891332 252412 ~ 274450 (+)
G262423 NA other downstream 1072017 2241408 ~ 2242965 (+)
G262436 NA other downstream 1544224 2713615 ~ 2714517 (+)
G265391 NA other downstream 4744392 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 5165887 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004631 bhlha15 coding NC_007123.7 CM002896.2 17754859 ~ 17756905 (+)