CI01000063_01384163_01441190 (FAM20CB, FAM20C)


Basic Information

Item Value
gene id CI01000063_01384163_01441190
gene name FAM20CB, FAM20C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1383198 ~ 1441349 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01384163_01441190.mRNA
ATATATATGCAATATGCCTATTGGAGAAAGAGTGAAGACATTTTCCACCGAAATAGGTGGTAGCGAGTGGTTAGGGCGTGCGTGTTAAGTACATCTTAAAAAGTCATTTCAGACAATAATGGGTAGTAGTGTGTGTTCAGACGCCCTCTTCTTGCACAATTTGACGCTACAGGAAGCGAGCCTGGGCTGTCTCTGTACTGCTGTTTTCAATCCCAGCCAATCCACTATGTGCGAGGGGCTTCAGCATCATGATATTTAACACACCCACCCTGAACTCCGACAGAGGTATTTCCTCAAGCGCCTGTCAACGGGCAGACATCACCTTCATACGAGCTGGATGTTCAGGGTGAAACGTTGAAACTTTCTCCAAAGAGCACATTTATCGACGGAAGGAGCTTCGATGCGATGCCAGACTTTCTCGAAACCTGCCAGGGCTGCCATGCGTATCATCGCTTTCAACGACTGAACAGCCTCGATTTGTACTGGATAAGAAAGGCAAATGAACTTGTGCAGCTGTGAAAGAGATCTCGTGCGTTGTATGAATAGCGTCAGATGTGAGGTGGACCGCGAACACGCACTTTTGAGGATAATTTAACTGACGAGGCTTGCCTTAATTATATTTCGCACATACCTGCAGTACAACAGCTATTAAATGTTAAAATAGACTATGAGCGATTGTGTCGGAGATTGTTCTCGCGTCTCGTCAACTGACTGCACGGGAGGAATTTAATCGCGAGCGCACGTAAATAACTGGATTATTGTTTCGCATGGATGTGGACGAGCGCTTTGCTAAATAAATCCCCATTTCTGCCCTTAAACTGGCAAATGAAAACGAAAACGTTCCATGTGTTCTTCTCATAAAATTGGGAGCCCGTGTTTTATGTACTGTTGGCGATGTAGTGCGCTTGCTCACTTTTATCCTTGCCATTCCAAACAAGTCATTTCTCGAACAGGAGACCCTGAAGATGATCCTCTTTAGAAAATTCCGCGTCTTGATTCTGATGGTGTTTCTTATAGCCTGCTCTATGCACATTATGATAGACTTGTTACCGAAGCTGGAGAGACGGAGCAGTAGCGCGTGCTCGTGCTCACACACACCCAGCGAAGAGCCGCAGAACTGGGCTAAGCATCGAGCCAAGCCGGGATCAGAGTCCGGCTGGCCTAATAAACACACACTCAGAATACTTCAAGACTTCAGCAACGAGCCGAACTCAAACCTGTCCTCTCACTCACTGGAAAAGATCACCGTTGGGGAGAGATCCGAGGCTTTGAAAAGATTTGAGCAGTTGACAGGTGACGAGAAGAGGCACGCGACGCGGGACTCTACCCTGAAGAACGCAGTTGTCAAGGGTTCGAGGCTCTCTGCGCTATTTGAGCATCCTTTATACACCAGGCCATTGCCTGCTTTAACTGATGAAGACACTTTATTCAATGTCAACACTGATATAAGATTTGACCCTAAAGCTGCAGAAAACCCAGAGTGGAATGGGGAAGGTAAAGATGGGGATTATGCTCCTACTGGTGAGATGTCCTCAGACTCATACCCAAACTGGCTCCGCTTCCACATTGGGATCAACCGGTATGAGCTTTACTCCAGGCACAACCCGGTCATTGATGCAATGCTGAAGGATCTGGTGTCGCAAAGGATCACAAGTGTTGCGATGAAATCTGGAGGCACGCAGCTGAAGCTCATCATGACATTCCAGAACTATGGCCAGGCACTCTTCAAGCCCATGAAGGCCTGGGGAATCAGGAGGTGGGGTGAGTCTGAGGAGTGGGTGTTGACTGCCCGCCTATGGGAAATGCACACTATAGCAGAAAAAGGAGACAGCAGGAGACAGAAGGGGCAGACACGGGAGCAGGAGACACCCCCAGACTTCTTCTACTTCTCTGATTTCGAGAGGCACAATGCCGAGATCGCAGCATATCATCTAGACAGTCTACTTATTGTTTCTTGGGAGATGGGGCCCAACCATAAAAATCTGAAGGTCCCTCACATGATTGGCGTGTTGTCTTGTCCTGTGCTGTTCTCTACCCGGCACTGGTCTGTACTCCGATCCTCCTCTCCGGCAGTGCGAGCGATTCTGGATTTCCGCCGAGTGCCGCCGGTGACTGGGCGACTGGTGAATATGACCAAAGAGATCAGAGATGTGACCCGTGACAAAAAACTGTGGAGAACCTTTTTCATTTCACCAGCCAATAACATCTGTTTCTACGGTGAATGTTCGTACTACTGCTCCACTGAGCATGCTCTGTGCGGGAAACCTGACCAGATTGAGGGCTCTTTAGCAGCTTTTCTGCCCGATCTGTCCCTGGCCAAGCGCAGAACCTGGAGAAACCCCTGGAGACGATCCTATCACAAACGCAAGAAAGCAGAGTGGGAGGTGGATCCAGATTATTGTGAAGAGGTGAAGCAGACGCCACCCTATGACAGCGGCACACGCCTGCTGGACATCATGGACATGACCATTTTTGATTTCCTCATGGGAAATATGGATCGTCATCATTATGAGACTTTTGAAAAATTTGGAAATGAAACTTTCATAATTCACCTTGATAATGGAAGAGGGGTGAGGAAGTCCACTCATTTACGGCTTCAGCTGTTGGCTAAGGAGGAGTTCAAACTGAGTGCTCTGATGGAGGAAAGTCTACAGACTGACACGCTGACTCCCATCCTCATTAGGCCTCATCTGGAGGCCATGGATCGCCGGCTGCGTCTGGTGCTCCAAGTACTTGCCGACTGCATTGAGAAGGAGGGCTACAGTAATGTAGTAGAGGACGACCAGGGCACAGAGGGCTTGAACACGGGCACAGTCCCACAGAGGTAGTGGGCACAAACTGTTCAGGTGCTCCCGGCGGGTCCTTTGAAGTCCCACCACAGATCTATAGACCATGAACGTCTTGCAAGAGATGCTCTTGTTGATAAACTTTTCTGAATTCAGTGAATTCCAAAGACTCATTCCTCAACCAATGGACCATGTGTTAAA

Function

symbol description
fam20cb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in enamel mineralization and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).
fam20c Enables manganese ion binding activity and protein serine/threonine kinase activity. Involved in biomineral tissue development and protein phosphorylation. Located in Golgi apparatus and extracellular space. Implicated in amelogenesis imperfecta. Biomarker of X-linked dominant hypophosphatemic rickets.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01384163_01441190.mRNA True 2987 mRNA 0.49 11 1383198 1441349

Neighbor

gene id symbol gene type direction distance location
CI01000063_01240976_01328455 TRRAP coding upstream 54510 1239382 ~ 1328688 (+)
CI01000063_01219046_01224170 NA coding upstream 157875 1218900 ~ 1225323 (+)
CI01000063_01168018_01168572 BHLHA15 coding upstream 213807 1165782 ~ 1169391 (+)
CI01000063_01095386_01102295 NA coding upstream 280903 1095386 ~ 1102295 (+)
CI01000063_01089059_01094639 PMS2 coding upstream 288176 1089059 ~ 1095022 (+)
CI01000063_01456382_01458080 NA coding downstream 14742 1456091 ~ 1459374 (+)
CI01000063_01500129_01504142 NA coding downstream 58688 1500037 ~ 1504470 (+)
CI01000063_01506279_01508184 RNF151 coding downstream 64930 1506279 ~ 1508931 (+)
CI01000063_01531962_01532897 NEURL2 coding downstream 89944 1531293 ~ 1533009 (+)
CI01000063_01533946_01534527 MSRB1B coding downstream 92597 1533853 ~ 1535375 (+)
G262211 NA non-coding upstream 184361 1196368 ~ 1198837 (+)
G262194 NA non-coding upstream 238191 1139352 ~ 1145007 (+)
G262191 NA non-coding upstream 247680 1132990 ~ 1135518 (+)
G262189 NA non-coding upstream 263322 1118933 ~ 1119876 (+)
G262185 NA non-coding upstream 281844 1101147 ~ 1101354 (+)
G262266 NA non-coding downstream 67930 1509279 ~ 1509628 (+)
G262101 NA non-coding downstream 213853 1655202 ~ 1656049 (+)
G262104 NA non-coding downstream 240870 1682219 ~ 1686364 (+)
G262314 NA non-coding downstream 296449 1737798 ~ 1738321 (+)
G262060 NA other upstream 672644 710110 ~ 710554 (+)
G261984 NA other upstream 715816 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 824864 533801 ~ 558334 (+)
G261700 NA other upstream 1108748 252412 ~ 274450 (+)
G262423 NA other downstream 800059 2241408 ~ 2242965 (+)
G262436 NA other downstream 1272266 2713615 ~ 2714517 (+)
G265391 NA other downstream 4472434 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4893929 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004636 fam20cb coding NC_007123.7 CM002896.2 18234557 ~ 18343653 (+)
bowfin (Amia calva) AMCG00018434 NA coding CM030135.1 CM030135.1 10925036 ~ 10934367 (+)