CI01000063_01739754_01764028 (RHBDF1B, RHBDF1, RHBDF1A)


Basic Information

Item Value
gene id CI01000063_01739754_01764028
gene name RHBDF1B, RHBDF1, RHBDF1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1739244 ~ 1764772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01739754_01764028.mRNA
GCATAAAAAAGATTGGTCCCTATTGCACACTATAAACAAGTTTAAATTATTAAACTGTAGAAAAATAGGAGAATTTGCATCCTCTGGTGGAGATATTGGGACATACACTTTTCTCACATTTTATGTTTTTAAGTTAACTGAAGCATTCTGTGACAGGCCACCATGAATTACTGCATTAGCATTATACTGTATACAAATATGACCATTTCTAAAGGCGATTTTAATGTCAAAAATGTGCAATGAAAAAATATCTCAGCTGAGCATGGACTGAGTCTGTGAGGACAAAAGCAGCTGTAGTTTTACTCTGATGTGACTGCAGTCTCAGCAGTGCATCATCATGTCACAACAACCAGATGGAAATGCGGATTATCGTGGTGTGTGTTCTTATGTAAGGCAGTGCTGTTGTGTGTGTGCATTGTTCACCCATATCTGTGCATTTATGTGTGTTTGAGCTGTTTATTTGACCCGGTTTGATCCTACAGCTGGCTGGCAAAGAGAGGGGCGGCAGACATGGCCGAAGCTGAGGATGAGAGCAGGAACAGCAGCCTGCAGAGAAAGAAACCACCCTGGCTCAGATTGGACATCCCCATTGCTCTGAACCCTGTGGAGGAACATAATAACTTTCTCCAGCCCGTCATGCGTAATAGCTTGTACCTGCGGAGTGCCAGTGTACCTACTGAAAACATCCAGCTCAGATGCCCACCGGTCGACCCCAATGCCTGCCGCAGACCCTCTGTCCTGCGCAAACCCTCCATCTCCCAGACCATCAAGAGTCCCACAGGGAAGAGGGTACGCTTTGAACAGATGAGCACCGTCCTGGTTAAAGGCCAGTGTTTCTCACGTCTGGAACCCCCCAGACGTCAGTCACTGCCACAAATCGTCCTCAGGGTATTTGGAGGACAGAGTAATTTGCCTTGGAAATGTGCTATCTTTACCCTTACAGATGAGGAAATATGTGAAATTCAGCATGTTTGCCTTCTCTGTAGGACAACGTATTATTGCTTGAGGCATAGGGTAGAAGGAAGGACAAGCCAATCTTTCACTCAGTGTGAAGGCTTGAGTTCCTCCTCTACCTCAGACATGACCTTCCTTGCCTCCTGGGATGAGTTAGACAGGGGCACAGCAGACTGGTTTGGGGTCAGCAATGATGTGGACGCCACCCAGAAATGGCAGCGGAAGAGCTTACGCCACTGCACCCAGCGCTACGGCAAACTAAAGCCTCAGGTGATACGTGAAATGGACCTGCCCAGCCAAGACAATCTCTCCATGACCAGTACAGAGACCCCCCCTCCTCTATACGTACCACCCGCACAACATGGCATGCAGAGGATCGTAGACCCGCTGGCTCGGGGTCGAGCGTTCCGTAACGTAGAGGAAGTGGATGGTCTTAGTATACCTCAGACCCCCATCACCCCCTGCGCAGCTTCCCTGTGCTCCTTCACCAGCTCCCGCTCTGGCTTCAACCGACCTCCCCGCAGACGTAAACGTGAGTCTGTCGCCAAGATGGGCTTCAGAGCAGCTGCTGCTCTGGTGAAGGGGCGCTCTCTGCGGGAAGGGACCGTTCGGCGAGTGCATCGGCGCAGTTTTGCTGCAGCCAGTTTCCTAGAGGAGGACACTGTGGATTTCCCAGATGAACTGGACACCTCCTTCTTTGCCAAGGATGGGCTTACGCATGAAGAGCTGTCCACATACGCAGACGAGGTGTTTGAGTCGCCTTCTGAAGCTGCCATTAAAGAAACTGATGCCAGTAGAGCTGGAGATGAGAGGGACTTGACGGGCAGTGCCCTAGAGAAGACAGAACTAGAGCGGAGCCATCTTATGCTGCCTCTCGAGAGGGGCTGGCGTAAGGGAAAGGATGGAGCTCTGTCTCAGCCTAAAGTGCGCTTACGACAGGAAGTGGTGAGTGTGAGCGGTCAACGGCGTGGACAGCGCATTACAGTGCCTGTTAAGAAACTCTTTGCCAAGGAGAAGCGTCCTTATGGGCTTGGCATGGTGGGCAGACTGACCAACCGCACCTACCGCAAACGCATTGACAGCTATGTGAAGAAACAGATTGAAGACATGAATGACCACAGGCCTTTCTTCACTTACTGGATTACCTTTGTCCATTTGCTGATTACCATCTTGGCGGTTTCCATCTATGGCATTGCACCTGTGGGCTTTTCACAACATGAGACAGTTGATTCTGAGGCACTGATTCACCTCGGTGCTAAATTCTCACCCTGCATGCGTCAGGATCAGGAGGTGCACCAACTCATTCAGGAGAAGAAGAACAGTGAGCGGCACTCGGCGTGCTGCGTCCGTAATGACCAATCAGGCTGCTTGCAGACCTCTCAGGAGGAGTGCTCGAGTACACTGGCATTATGGGTAAAGTGGCCTCAGCACCCAAGTGCTCCATATCTAGAGAAGAAAGTGCGGGAGTATGGCTCTGTGTGCCATCAAGACCCCAGACTGAATAATCGTATTTCGCACATTTATGATATTAGGATTTGTCTGGAGCCTGCCTCGGTTACTCCTCACGAGTGGCCTGATGACATCACCAAGTGGCCGATATGCACCAGGTACAGCACAGGAAACCACACTAACCTGCCACACATTGACTGCGTCATCACTGGCAGACCCTGCTGCATCGGAACCAAAGGAAGGTGTGAGATTACATCAAGAGAGTACTGTAACTTCATGAAGGGATACTTCCATGAGGAGGCCACTTTGTGTTCCCAGGTGCATTGCATGGATGATGTGTGTGGCCTCCTGCCTTTCCTGAACCCAGAGATCCCAGACCAGTTCTATCGGCTCTGGCTCTCTCTCTTCCTGCATGCTGGGATCCTGCACTGTCTGGTGTCTGTGTGCTTCCAGATGACCATTCTGAGGGATTTGGAGAAGCTAGCAGGCTGGTTGAGAATCTCCATCATCTATATCCTCAGTGGGATTACAGGCAACCTCGCCAGTGCCATCTTCTTACCGTACAGAGCAGAGGTGGGTCCGGCTGGTTCTCAGTTTGGCATCTTGGCCTGTCTGTTCGTGGAACTGTTCCAGAGCTGGCAGATCTTGGCCCGGCCGTGGAGGGCCTTCATCAAGCTCTCATGTGTAGTTCTGTTCCTCTTCGCCTTCGGCCTGCTGCCCTGGATAGATAATTTCGCCCACATCTGCGGCTTCTTCTCAGGCTTCTTCCTCTCCTTCGCCTTCCTGCCCTACATCAGCTTCGGCCGCATGGACATGTACCGCAAACGTTTGCAGATCCTAGTGGCACTTACTCTTTTCCTGGGCATCTTCTCCAGCTTCGTCGTTCTCTTCTATGTTTACCCTGTCAAGTGCGAGTGGTGTGAGCTTCTCACCTGCATCCCACTGACGGACAAGTTTTGTGAGAAATACGACCTCAATGCTCACCTCCACTGAGGCCTTGCAGAAGAAGGGCTGCAATGGAGGGCATTTGGACACCAGCTCCAGCTTTTCTGCAGGCCTGGACTGATTTCATTTACAGACTCTTTCAACATACAGTCTTTTTATATAATGTACTTTATAAAGAAGGTTTTATTGTTTTTAATTTCTTCGGCTCAGAGAAGAGCCCGCCCCAGGAGGGAAGAATAATAGTTATGCCAATAGTGCCTTTTCACTCAGTACCAGCTACTGCCATATCTGAGTCCTGTCAGATCGGAGCACTGAGGCAAACCTGTAATGTGTGTAGTGCAACTACAATGGTAATATTTGGTAGTGTTTTAGCTACCTGATCACATGTAACACAAAATACAATGTGAAGAAATCACTAAGTCTGCCTTCATTTTTTTTTTTTTTTCGGTCGTTTTTCTCTGGTTAAAATAATGGTTCTGTTCTAGCAAGCTGCCTATGTAGTCAACATTTTTATTTGCATAGGGACAATACAAAAAAACATTTAGGTTGAAAGACTAAAAAATTATGCTAATTTGCATCTCAAGTAGTTCTTATAGGCACCGCACCCAACACAACGTCTGTTCCAAATAGGAAGCAACATAATTATGTTGTCTTTTAGGGGAGGATCACATGAGTCCTTTGTGGAGAAACCAGTCCCATAATGCAATGCAACATTTTTATACTAATATTAATTTGATACTAAAAAGTATCAACAAAAATAGTTAAAGTTGTTAAAAAGTATAGGAGAGATGA

Function

symbol description
rhbdf1a Predicted to enable growth factor binding activity and serine-type endopeptidase activity. Predicted to be involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).
rhbdf1b Predicted to enable serine-type endopeptidase activity. Predicted to be involved in regulation of epidermal growth factor receptor signaling pathway and regulation of protein secretion. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).
rhbdf1 Predicted to enable growth factor binding activity and serine-type endopeptidase activity. Involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Located in Golgi membrane and endoplasmic reticulum membrane.

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01739754_01764028.mRNA True 4140 mRNA 0.48 19 1739244 1764772

Neighbor

gene id symbol gene type direction distance location
CI01000063_01692878_01697954 NA coding upstream 41166 1692394 ~ 1698078 (+)
CI01000063_01675750_01678399 HBBE3 coding upstream 60786 1675501 ~ 1678458 (+)
CI01000063_01672649_01673337 HBBE2 coding upstream 65859 1672574 ~ 1673385 (+)
CI01000063_01662111_01665744 AQP8A.2, AQP8, AQP8A.1 coding upstream 73500 1662111 ~ 1665744 (+)
CI01000063_01658882_01660951 AQP8A.1 coding upstream 78102 1658882 ~ 1661142 (+)
CI01000063_01784971_01788682 NA coding downstream 20199 1784971 ~ 1788898 (+)
CI01000063_01824468_01849446 NA coding downstream 58082 1822854 ~ 1849454 (+)
CI01000063_01950136_01991996 SHISA9A coding downstream 183402 1948174 ~ 1992128 (+)
CI01000063_02207083_02208978 MAFF, MAFFL coding downstream 442311 2207083 ~ 2209144 (+)
CI01000063_02259693_02263566 NA coding downstream 494707 2259479 ~ 2263765 (+)
G262314 NA non-coding upstream 923 1737798 ~ 1738321 (+)
G262104 NA non-coding upstream 52880 1682219 ~ 1686364 (+)
G262101 NA non-coding upstream 83195 1655202 ~ 1656049 (+)
CI01000063_01533946_01534527 MSRB1B non-coding upstream 203869 1533853 ~ 1535375 (+)
G262266 NA non-coding upstream 229616 1509279 ~ 1509628 (+)
G262333 NA non-coding downstream 41192 1805964 ~ 1806185 (+)
G262122 NA non-coding downstream 46736 1811508 ~ 1813486 (+)
G262098 NA non-coding downstream 85584 1850356 ~ 1854092 (+)
G262511 NA non-coding downstream 236090 2000862 ~ 2001064 (+)
G262517 NA non-coding downstream 243225 2007997 ~ 2008296 (+)
G262194 NA other upstream 594237 1139352 ~ 1145007 (+)
G262060 NA other upstream 1028690 710110 ~ 710554 (+)
G261984 NA other upstream 1071862 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1180910 533801 ~ 558334 (+)
G261700 NA other upstream 1464794 252412 ~ 274450 (+)
G262423 NA other downstream 476636 2241408 ~ 2242965 (+)
G262436 NA other downstream 948843 2713615 ~ 2714517 (+)
G265391 NA other downstream 4149011 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4570506 6335618 ~ 6338283 (+)

Expression


Co-expression Network