CI01000063_05973598_05981144


Basic Information

Item Value
gene id CI01000063_05973598_05981144
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5973598 ~ 5981144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05973598_05981144.mRNA
GGGCTTCTGAACTTCTACTTCAAATTCAAGCGTACCTTTTATCTCCGTACAAAAACAATAACAAGTGAAAAGGTGCAATCAAGGGTTAAGATGCATGTTTGGTCGAAAAAGAAAAACCTCAAACCTTCTTTGACCTTTTTCATAGTTTTCACATGGCCCTATGACCCTGCCAAGGGACGACACGAATCTTTTCTTGGCCAGCGGATACAGAGATGTGCTCGTATTCAATGTCGAAGAGAGGAGAGTCACGGCAAGTGCATGCTTGTTGTCACTTTTGTGTTATACTATACCAGACTACTGCAAGCTCACTCAATACATGTTGTTTTTCAGACCGTGATGCAGTTTGAAGCTTCAGTGACAAATTTGGCTTTAAGTGACGATAAATATCGGCTTTATGCACTTTGCGCGAACGGTGGGCTTTACTGCATCCCTCTACCACAGCTCAGTTCTTCCTCTGTCCTGGTGAACAAAAGTCCCGACCGTGTGCTGAATATTGTATCTGATGATTCCATTGTCCTGAAAAATGTCAGTCTGCAAGCATTCACCATAGTCGAGAAGATCCTTGTGACTCTTAGTCTTCACAAGTCCATCTGGAGTTTTGATCTCTATGAAGAGCCTGGATCCAGACCCCTTTGTAAACTTGCAAGTTTCCAGGTTGCAACTGTAAACACATGCTGCTTAAACATAACAGACAAAGAAAAAAGTGTGAACTGTCCTCCAGTACTGACTTGCATCTACCCTAAGGGATCCACATCAGTCAGCTCTCAACAGTCTGACCTCCATCCTTATCTTGAGCCCCATCTTTTCAGGCTCTTATTTGGAGTGGACGCCTCTTTAGTCAATTCTCCAGTCATTCTATGTGGTTTACCTGATGGACGTATTTGCTCCTTTCCTTTGCGCGTCCCCACCCTGGCTGGTCCAAGAGGAGAGCAGAGATCTCCAATCAGAGTCCTCCAGAGCTTAGAGCAGCCAATTGTATTTATTGGAACCTGCGTCTCTGGAGAACAAGGACCTCAGTGTCTCGTTGCAGTTGGTCAAAGAGGCAAACTCCTAATGGTCAGAAGCAAACAAGCAAGCAAGGAAGGAAAAGAGGCAGATTATAGCTTCAATGAGCATAGTGTACGAGGACCAGTGCTGTGTGTTTGTGTTGATGATAAACGGCTGTACTACAGCTCTCTCAATGACCTACACGCTCTTCAGCTCACCACAACATCTTCAGCAGAAGCCGCAGAAAGTGAGTCCCAGCTGCAAGCTCTGACCTCAGAAAGTCTTGGTGTATGCAGGGTTATAGCTCTTGCTCGGCCATTTACTAACCCCACAGGATCTGTGCAGCTTTTGGGTGTATCTTTGAAGGGAAGACTGCTTCGAGTAAACCTTCCTCAAGCATCTGAAAAAGGAAATGTGTCCAGGTTACCTTCATCTTTAGCAGGCCAGAGAGTGAAGGACCTTCTGGCTTCCATCGGAAACATCTGGGAGAGGGCGGAATCCTTGAAACACAAGCTTCAGGAGAAAAATGAGTCTCTCAAACATCTGAATCAAGTCGTAAATGTTTGCAGCCTACTGTTGGACACCCATGGGAATGAAAAAAAGTTTAATATGGGCACCAAACATCCAATTAGCTGTCATGGTGTAGCTAGATGGAGCTCATTGCTCCAAAGAGACTCTTTGACTCTTACATGTGTGCTTGAAAATTCAAGTGGATGTACATTGGAACATGGCTGGACTTTGTGCATTCAGGTCCACCCATTATCCCAATATTCAAATATGGAGAGCTCATCTAGGACATACTCATTCCCATTGAGGAAACTGGATTCTGGTCAGAAACTGGATGTAACCATTCCTCTTGAAAGCGTTGATGGGCTGTCTCTGCCAGTGAAGGTGTGCTGTTCTCTCTCCTTCTCCCTCACCAATCTGTTTAGCCCTGAAGCATCTTCTCCTGGTGTTTCCCAGCTTCTAACAGAGACGGGCTCCATCAGTGCACCTTTGAATTCTTTAACAGTGGACTGGCTTGATGCTTTAAGGTTAGAGGGATCGTTTTCTCATGGTAACATCAGACACAACAGTGTCATGGATGGCATTCAAGCCTTCCTGCGTTCCAGAGGAACATCAACCAAAGATTCTGATACTACTTCCAAGTCAGGACCTTTTGCAGTGGTGATCAGAGTATCATCAGAGCTTCTAAAGGCCAGACTGCACCTCTCAGTAACCAGCAGTGCAGAAACATGCGTGTCTGTGCTAAACTGGTTGGTATCACCTGAGGCGATAGGACAAACAAAGTCTGTACAGAGTCCAGTGGTTTGTGCCTACAGCCCAGATGGATCCTCTGTCAAGATTATGGCCAAAGAGGTGACACTGGGAGATTTATGTTCTGAAGGACCTATTGAAGTCCTGGAGATTCGGGTGGAGAGTACATCTGTGGCAGCAGTGTGTGGACTGCATCATGCCATTCTGAGGCGCCTACAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05973598_05981144.mRNA True 2463 mRNA 0.46 7 5973598 5981144

Neighbor

gene id symbol gene type direction distance location
CI01000063_05954897_05957678 ARMC7 coding upstream 15845 5954897 ~ 5957753 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding upstream 25066 5946534 ~ 5948532 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding upstream 37349 5922194 ~ 5936249 (+)
CI01000063_05894405_05894580 NA coding upstream 78921 5894405 ~ 5894677 (+)
CI01000063_05673923_05678546 NA coding upstream 294873 5673829 ~ 5678725 (+)
CI01000063_06035175_06080992 ARHGAP12, ARHGAP12B coding downstream 54031 6035175 ~ 6080992 (+)
CI01000063_06157144_06165234 NA coding downstream 173841 6154985 ~ 6165328 (+)
CI01000063_06222033_06227075 ZNF438 coding downstream 240889 6222033 ~ 6227665 (+)
CI01000063_06264735_06268961 MSL1B, MSL1 coding downstream 283356 6264500 ~ 6269050 (+)
CI01000063_06276811_06289690 FBRS coding downstream 294908 6276052 ~ 6289732 (+)
G265364 NA non-coding upstream 3128 5967593 ~ 5970470 (+)
G265397 NA non-coding upstream 12112 5961172 ~ 5961486 (+)
G265395 NA non-coding upstream 13462 5959689 ~ 5960136 (+)
G265333 NA non-coding upstream 21097 5898387 ~ 5952501 (+)
G265315 NA non-coding upstream 47521 5874658 ~ 5926077 (+)
G265380 NA non-coding downstream 56071 6037215 ~ 6130744 (+)
G265382 NA non-coding downstream 59899 6041043 ~ 6053411 (+)
G265425 NA non-coding downstream 152897 6134041 ~ 6135372 (+)
G265345 NA non-coding downstream 183187 6164331 ~ 6188669 (+)
G265456 NA non-coding downstream 277426 6258570 ~ 6258858 (+)
G265391 NA other upstream 54569 5913783 ~ 5919029 (+)
G262436 NA other upstream 3259081 2713615 ~ 2714517 (+)
G262423 NA other upstream 3730633 2241408 ~ 2242965 (+)
G262194 NA other upstream 4828591 1139352 ~ 1145007 (+)
G262060 NA other upstream 5263044 710110 ~ 710554 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 354134 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004747 faap100 coding NC_007123.7 CM002896.2 26538861 ~ 26547248 (+)