XLOC_004747 (faap100)


Basic Information

Item Value
gene id XLOC_004747
gene name faap100
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26538861 ~ 26547248 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009394
AGCCTTGACCCTCATTGGTCACTGTAGAGTCTATGGCGGGTACACGAAACAGTTAGTTACAGTCACAAACATGCGGCTAAATCTGATAGCTATTAGTCTACGAGCAGAAGCGTCTTTTAAGTTTCAATAAACTCTGAAAAGAATGTACAACAGGCACAATAATGGCCGCGGCTCGGTGCAGTGTTGAGTTTTTATCAGAGTTCAGTGACTGTCAGTCAGACTCAGTTCGCTTCATTCGGGAGGACACGAATCTTTTCTTGACCAGCGGACACCGAGATGTGCTTATATTCAGTGTGCAGGACAGAAAAGTCAAGACCGTGATTCAATTTGAAGACTCGGTGACTTTTCTGGATTTAAGTGATGATAAACATCGACTTTATGCACTCTGCAAGAACGGTGGGCTTTACTGTATCCCTCTACCACAACAGCTCAGTTCTTCCCCTGTGAACAAAAGTCCTGAGCCTATGCTACATGTTGTATCAGATGATTCACTTGTCCTCAAAAATGCAGGTCTGCAGGCATTCACCATAGTCAAAAAGATCCTTGTGACTCTTAGTCTTGACAAGTCTGTCTGGAGTTTTAATCTCTATGAAGAGCCTGGATCCAAACCCTTTTGTAAACTTGCACATATCCAGATCACAACTGTAACGACTTGTTGTTTAAACGTAGCAGACAAAGAAACAAGTGTGAGCTCACCTCCAGTGCTGACCTGCATCCATCCTGAGGGCTCTACGTCAGTCAAAACTCATCAATCTGACTTGCATCCTCATCTTGAGCCCCATCTCTTCAGGCTTTTATTTGGAGTGGACGCCGCTTTAGTCAGTTCCCCGGTTATTCTGTGTGGTTTACCTGATGGACGTATTTGCTGCTTTCCTTTGCTTGTCCCGACTCTGACTGGTCCAAGAGGAGAGCAGAGATCTCCAATCAGAGTGCTTCAGAGCTTAGAGCAGCCAATCGTATTCATCGGAACTTGCATCTCTGGAGAACATGGACCTCAGAGTCTCATTGTAGTTGGTCAGAGAGGCAAACTACTAATGGTCAGAAGCAAACCAAGAAGCTCCGAAGGAAAAGAGGCAGATTATAGCTTCAATGAGCATAGTGTTCGAGGGCCAGTGCTTTGTGCCTGTGTTGATGATAAACGGCTGTTCTACAGTTCACTTAATGACTTTCACGCTCTTCAGCTCACCACATCATCTTCATCAGAAGCCATGGGAACTGAGCCCCAACTGCAAGCGCTGATATCAAACAGTCTTGGTGTATGCAGGGTTATAGCACTTGCTGGACCATATACAAACCCAACAGGGTCCGTTCAACTTTTGGCTTTATCTTCAAGTGGAAGACTGATGCGAGTCAACCTTCCTCAAGGGTCTGAAAAAGGAATCTTGTCCAGGTTGTCCTCATCACTGGCAGGCCAGAGAGTGAAAGACCTACTTGCCTCCATTGGAAACGTCTGGGAGAGGGCAGAATCCTTGAAACAGAAGCTTCAGGAGAAAAATGAGTCTCTCAAACAACTTAATCAAGTCCTAAACATTTGCAGCCTTCTGTTGGAAAGCAATGGGAAAGAAAAGCAATCTAACATGGACACCAAACCTCTGATCAGCTGTCATGGTGCAGCTAGATGGAGCTCACTGCTTCAAAAAACCTCTTTGACTCTTACATGTGTGCTTGAAAACTCAAGCGGTTGTACGCTTGAACACGGCTGGACTTTGTGCTTTCAGGTCCATTCATTTTACCAACATCCAAATACGGAGAGCGCATCTAGCTCGTACTCATTCCCACTGAGGAAACTAGATTCAGGTCAGAAACTAGATGTGACTATTCCTCTTGAAAGCAACGGTGGCCTGTTTCTGCCAGTGAAGGTCTGCTGTtccctctccttctctctctgtgCTCTGTTTGGCCCTGAAGCATCTTCCCCTGGTGTTTTCCAGCTCCTAAAAGAGGCAGGCTCCATCAGCGCAACTTTGAATACTTTAACAGTAGACTGGCTTGATGCTTTAAGACTCGAGGGATCATTTTCTCCCAATGACATCAGATGCAACACTGTCTCCGAAGGCATCCAAGCCTTTCTGCGATCCAGAGGAGTGTCTACAAAACATCTCGATAACATTTCCAACCCAGGACCTGTTGCAGTGGTGGTGAGCGTATCGATCGAGCTTCTTAAAAGCAAACTGCACCTCTCAACAACCAGCAGTCTGGAGTCGAGCATGTCTGTGCTAAACTGGTTGGTATCACCTGAGAAGATAGGATCTGTGAAAAGTCCAGTGGTTAATGCCTACAGTCCAGATGGATGCTCTGTGAAGATCATGGCCAAAGAGGTAACACTGGGAGATTTCTATTCTGAAGGACCTCTTGAAGCCCTGGAGATTCGCGTGGAAAGTTCATCAGTGGCAGCAGTGTGTGGACTCCATCACGCCATTTTGAGGCGCCTATTGGATTTGCTTAGAGACTCGTCTGCACAATATAGCCATACAAGGAATTTAAAAGCACAAAGCTTGTGTGAAGCTGTACGGCATGTTGAgtCTCTTTATAAAGATCTTCAGGATGCTCAAAATAAAGCGGCTCTTGGTGGGGAAATGAAGACAAGTCAGAGATCTGATGTCCTGTTCCACATTTTTCAGGAGCTGAGAACAAACCCACTGGTCATTCTCTAAACTACAAACACTCATGatgtatcaaataaaaagttaataCAGTAGATGTCCGTAATTTATATGGTTATACTTTTAAGACAAAGGGCCTGACTGTCTCATTGATTGTTCTATAAAAACAGACATACCAAGatgtaaacacacactctcacataaaAGCCCTCTTCACTGGACTTCGCCCTACCTCAAGTGTATAATTCATCAAAACATgaatttgtaatatttgtttaatcCACATTAAAGTCTGTGAGTGTGTTCTAAA

Function

symbol description
faap100 Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Orthologous to human FAAP100 (FA core complex associated protein 100).

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-130603-100 Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Orthologous to human FAAP100 (FA core complex associated protein 100).

Ensembl:

ensembl_id ENSDARG00000079457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009394 True 2913 mRNA 0.45 9 26538861 26547248

Neighbor

gene id symbol gene type direction distance location
XLOC_004746 chad coding upstream 13162 26512569 ~ 26525699 (+)
XLOC_004745 armc7 coding upstream 44010 26491637 ~ 26494851 (+)
XLOC_004744 NA coding upstream 46888 26489353 ~ 26491973 (+)
XLOC_004743 ndel1a coding upstream 51498 26467847 ~ 26487363 (+)
XLOC_004742 itgb3b coding upstream 77117 26434478 ~ 26461744 (+)
XLOC_004748 NA coding downstream 42396 26589644 ~ 26593298 (+)
XLOC_004749 si:dkey-148d16.5 coding downstream 61635 26608883 ~ 26611971 (+)
XLOC_004750 arhgap12b coding downstream 74658 26621906 ~ 26726048 (+)
XLOC_004751 NA coding downstream 144571 26691819 ~ 26692051 (+)
XLOC_004752 NA coding downstream 190183 26737431 ~ 26834192 (+)
XLOC_004738 CR932018.1 non-coding upstream 890618 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 1034481 25502406 ~ 25504380 (+)
XLOC_004733 CR932077.1 non-coding upstream 1108490 25312018 ~ 25430371 (+)
XLOC_004731 CR848736.1 non-coding upstream 1324134 25201543 ~ 25214727 (+)
XLOC_004754 BX469896.1 non-coding downstream 347073 26894321 ~ 26896616 (+)
XLOC_004762 dre-mir-10a non-coding downstream 587621 27134869 ~ 27134967 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_05973598_05981144 NA coding CI01000063 null 5973598 ~ 5981144 (+)