XLOC_004762 (dre-mir-10a)



Basic Information


Item Value
gene id XLOC_004762
gene name dre-mir-10a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27134869 ~ 27134967 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00009419
TGTCTGTCATCTATATATACCCTGTAGATCCGAATTTGTGTGAATATACAGTCGCAAATTCGTGTCTTGGGGAATATGTAGTTGACATAAACACAACGC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082315

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00009419 True 99 miRNA 0.38 1 27134869 27134967

Neighbor


gene id symbol gene type direction distance location
XLOC_004761 hoxb5b coding upstream 3134 27129659 ~ 27131735 (+)
XLOC_004760 hoxb6b coding upstream 6101 27127139 ~ 27128768 (+)
XLOC_004759 hoxb8b coding upstream 14698 27117609 ~ 27120171 (+)
XLOC_004758 ttll6 coding upstream 19457 27096835 ~ 27115412 (+)
XLOC_004757 srcap coding upstream 42583 27061720 ~ 27092286 (+)
XLOC_004763 hoxb1b coding downstream 6173 27141140 ~ 27142834 (+)
XLOC_004764 skap1 coding downstream 21976 27156943 ~ 27206904 (+)
XLOC_004765 nbr1a coding downstream 78766 27213733 ~ 27229858 (+)
XLOC_004766 tmem106a coding downstream 96245 27231212 ~ 27237032 (+)
XLOC_004767 arl4d coding downstream 108092 27243059 ~ 27245757 (+)
XLOC_004754 BX469896.1 non-coding upstream 238253 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 300677 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 442818 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 541571 26589644 ~ 26593298 (+)
XLOC_004744 NA non-coding upstream 642896 26489353 ~ 26491973 (+)
XLOC_004777 NA non-coding downstream 1242063 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1482734 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1798557 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1878606 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 2177598 29312565 ~ 29373414 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06352595_06356492 NA coding CI01000063 null 6352359 ~ 6357553 (+)