XLOC_004763 (hoxb1b)


Basic Information

Item Value
gene id XLOC_004763
gene name hoxb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27141140 ~ 27142834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009420
ATTTATAGCTCGCTAAACAAATACAGTTGTCCTCACCGTCACAGGTACACAATAGCTATAAATTATCTCTTGCTGTACTCGCTTTAATTCACATTAGACCTACATAGCGACTTTATCAGATTGACGGGTGGATTCGATTGATGTGTTTGTCATGTAAATACGAATCGTTTGATGGACACCTGCAACGCCCAGAGTGCTACCGCAGGTCGCACACTATTGGCGCAAAATTAGTCACATGATCTGTCACTTAACTGATATGAGCTCAGATACAACTTTGCGTGGTTTGACATACTGCTTAGAGGTTGTAGGGGCACTGGGACCACACATCAGCTCATATTGACCCTGCTTAATCAATTTTGCTTGGTCAGTCAACAATGAATTCTTACTTAGATTATACGATTTATAACCGTGGTTCTAACACTTATAGTTCGAAAGTTGGGTGTTTTCCTGTAGAGCAAGAATACTTGCCAAGTGCTTGTGCAAGTACAAATAGTTACATTCCCGAGGGACGGCCAGTCGGAGGAAACACTTTCACATCGGCACCGCACGAAACTCATGGCACATCTTACGCACAAATTCAATCGCAGCCCTTCCACCTCAACGTGGACATGGGTAAAACAGGACACAGCAATTTCTGCAAGCAAACCAGACCTCCTCATTCGGACTATGGACATCAACACGTTCTCACTCAAGCAGATGACCACATGCGCCTTCAGTCCCCTGGCTTTTCCGTCGTGAATATGGGAGCCAATATTGGAACTTACAGTGAATCAAACTGCAGGCCTGGCTCGGTCTCTGCAAGCCACTATCAATCATATGCATATGGAGAACCCGAACCACACGGCTATGGTTCGTTCAGCAAGTATCAGGTCTCCCCTGACAGTGACAGCGACTCCAAGACGAACATTAAACAAGCGCCAACCTTTGACTGGATGAAAGTCAAGAGGAATCCCCCTAAAACAGTTAAAGTCGCCGAATACGGAATCCATGGCCAGCAGAACATAATACGCACCAATTTCACCACCAAGCAGCTCACGGAACTTGAGAAGGAGTTTCACTTCAACAAATACTTGACCAGAGCGCGCAGAGTGGAGGTGGCCGCCACACTCGAACTGAACGAAACGCAGGTTAAAATCTGGTTTCAGAATCGCAGAATGAAGCAGAAGAAGCGCGAGAAGGAAGGCACGGCCCCGGTGATTAAAAGAGTAACCCTTTGCTCTTCTGGTCAAAACGCAGACCACTCAACTAGCTCATCGCCTGGTGCTTCGCCTACCTCGGACTCTTCCACTGCAATTTGATGAGTGCCAGACTTTCGTTTCGTTGCTGGAGGACTATTTAACTTATTCTGTcgtagaaaaaaatattgtttacgtgctatttgtgtttttgtgctgCATTAGAACTACTAAATAGATGCATTAACAGGGTATATGCTTAACGTTCAAATGTTCTTTTTCTTGTTGTTGTCGTCCGGTCAATTATTTTGCACTACAGATTCATTCCTCTGTTGAAAGagtaataaaatgtgaaaaagacTGACATGTTTATGTATTTCGAATATATTCGGACCTGTgacctgataaataaatattttatttttctgaaa

Function

symbol description
hoxb1b Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including hindbrain development; neural keel formation; and regulation of histone modification. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; mesoderm; neural keel; neural plate; and presumptive neural plate. Orthologous to human HOXB1 (homeobox B1).

GO:

id name namespace
GO:0034728 nucleosome organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021570 rhombomere 4 development biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071599 otic vesicle development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0031060 regulation of histone methylation biological_process
GO:0021663 rhombomere 4 formation biological_process
GO:0014025 neural keel formation biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-290 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including hindbrain development; neural keel formation; and regulation of histone modification. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; mesoderm; neural keel; neural plate; and presumptive neural plate. Orthologous to human HOXB1 (homeobox B1).

Ensembl:

ensembl_id ENSDARG00000054033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009420 True 1606 mRNA 0.44 2 27141140 27142834

Neighbor

gene id symbol gene type direction distance location
XLOC_004762 dre-mir-10a coding upstream 6173 27134869 ~ 27134967 (+)
XLOC_004761 hoxb5b coding upstream 9405 27129659 ~ 27131735 (+)
XLOC_004760 hoxb6b coding upstream 12372 27127139 ~ 27128768 (+)
XLOC_004759 hoxb8b coding upstream 20969 27117609 ~ 27120171 (+)
XLOC_004758 ttll6 coding upstream 25728 27096835 ~ 27115412 (+)
XLOC_004764 skap1 coding downstream 14109 27156943 ~ 27206904 (+)
XLOC_004765 nbr1a coding downstream 70899 27213733 ~ 27229858 (+)
XLOC_004766 tmem106a coding downstream 88378 27231212 ~ 27237032 (+)
XLOC_004767 arl4d coding downstream 100225 27243059 ~ 27245757 (+)
XLOC_004768 dusp3a coding downstream 143160 27285994 ~ 27305823 (+)
XLOC_004754 BX469896.1 non-coding upstream 244524 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 306948 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 449089 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 547842 26589644 ~ 26593298 (+)
XLOC_004777 NA non-coding downstream 1234196 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1474867 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1790690 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1870739 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 2169731 29312565 ~ 29373414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06358644_06359789 HOXB1B coding CI01000063 null 6358319 ~ 6360115 (+)