XLOC_004764 (skap1)


Basic Information

Item Value
gene id XLOC_004764
gene name skap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27156943 ~ 27206904 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009421
AGACTtgtttcattttcacaacaatgtGCTGTGCACTTCCTCTTCATCTTCCCTCCGCGAGCCGgttcgtgtgtgtgtggatttctcTTCGATTTCACTCTACGAACTCCTGCTGTAGGATGACAATTGACCAACAAATTCATTCAGCAATGATATGACCTTCAGTCGTTGACATCGTAAAATTCTACAAACATTCATTTCTGTTGGACTCAGGGAGTTAGACATGGGGACGGCTGTTGATGACATCAGACAACTGTTAAGAGactgTGAGCTGTTTGTTTTTGAGATCCTCCATGATGAGAATCTCAGTATTGCAGCTCGAGAGTCTAGGGAAATTCTCCAAAGAAATTTTGTTGTCGTCCAGAAAAGACACCCACAAGAATTTCCCCACAGACtTGAGTCCAATCCTGAAGACAGTTCAGATGACAACCGCAGCTCCAGTCTGGGACGCTCTGCCCCCTCAGATGATATGTCAGTGGCCTCTGACTACCAGGAGGAAGGAGGCTCTGAGCACCGCACGGTTGACCCCTCCGTGCCTGCAGCCTCGTCTGGATGACAGCAGCCCTGCAGCCTAGGATGGGAAGCCCAGGGCAGGAGGAGCTTCACAGTGGGGTGGAAATGTTGCCAGGTCAAGTTTAGGAAATGCAAAAGTAAGAGAAGAAATGCTCTTATCACTTGGAATGGCCTGGTTGAAAATATCTGataactaaaaaaactaaataaaaaaggataaTTTTATAACGC
>TCONS_00009422
AGACTtgtttcattttcacaacaatgtGCTGTGCACTTCCTCTTCATCTTCCCTCCGCGAGCCGgttcgtgtgtgtgtggatttctcTTCGATTTCACTCTACGAACTCCTGCTGTAGGATGACAATTGACCAACAAATTCATTCAGCAATGATATGACCTTCAGTCGTTGACATCGTAAAATTCTACAAACATTCATTTCTGTTGGACTCAGGGAGTTAGACATGGGGACGGCTGTTGATGACATCAGACAACTGTTAAGAGactgTGAGCTGTTTGTTTTTGAGATCCTCCATGATGAGAATCTCAGTATTGCAGCTCGAGAGTCTAGGGAAATTCTCCAAAGAAATTTTGTTGTCGTCCAGAAAAGACACCCACAAGAATTTCCCCACAGACtTGAGTCCAATCCTGAAGACAGTTCAGATGACAACCGCAGCTCCAGTCTGGGACGCTCTGCCCCCTCAGATGATATGTCAGTGGCCTCTGACTACCAGGAGGAAGGAGGCTCTGAGCTTTTTGAAGAGATCCCTCTGGTGGCTGCACAAGACCTGAGTAACATTCTGAAGCAAGGTTACCTGGAAAAAAAGAGACGAgATCACAGTTTCTTCAGCATGGAATGGCAAAAGCGATGGTGTGTTCTGAACAACACCATATTTTATTACTTCGGGAGTGATAAAGACAAGCAGCAGAAGGGCTCGTTTTATATCAATGGTTACAGTGCAGAGTTGGTTCCCAGTTTACGCAAAGACTCCAAGAAGAGCTCCTGCTTTGAGATGAGTGCTCCTGGAAGACGCTCTTACCAgTTCACTGCCAGCAGTCCTCGTGAAGCAAGAGAATGGGTGGACCAGATCAATTTTGTTCTTAAGGATTTGAGCTCAAACTTCATCCCTTTTGATGATGACGAGGAAGAAGAAGAggtggaggaagaggaagagacgTATGATGATATTGAACGAGCAACAACACCACCACCTCCAAGACCTGGAGTAGCGTCTGCACAGGTTACAACCCCGAGAAAAACTCAAAACAGCCATGAAGAGTGGAAAGACCAAGCACTGCCTCAGGAAGACGAAGAAGATGATGAGGAAGAGGACATTTATGAAATACTTCCCGatGATGAAAATTCTGACAACGCTGAAGATTGCAGTGAGAGAACTGGGTCCTCCGATTATGCCAATTATTACCAAGGCTTGTGGGATTGTGAAGCTGAGGGACCGGATGAGTTGGCCTTCCAGAGAGGAGATTTGATCTACATCCTCAGCAAGGAGTATAACATCTATGGATGGTGGGTCGGTGAGCTAGATGGTGCCATCGGCATAGTTCCCAAAGAGTTTTTACACCCTGCTTATATTCTATGAGGTTTGCTTTGTTGCGAAGATCACAGAAGCAAATGTCTTCAAAGTTTAAATGAATTGCATTTTAGTTAATagactaataataattaatagaaatgtttaaacttaaaaaaaaaaagctctaataGTTATCCAATCTGAGAACTAAGTGTTTTTGTGAGTAAgccttttattatttatgtgtgtacACTAAAAGGCTTATTATTGTCCAAGTCTAGTTTTCTGATTTATTCAAATacaagacacacagacacacacacaattgatTTCTACAATACTGTTGCAAACTGGTTGAATTCAAACTAATTTGATAatgttcaaattaatttgtttaaattcagctcaaatcAATTTACATCCACTACTATAAAAAACATAAATCGTTAttaggaatcatctttgaatattttcttCAGTGCATTTATGCAAATAGTGTACATATGAAAACCATTTGTAGCATGAGAAAGTCATTTTAGCAGTTCTCATTTACTGTTATATAAAGACAGTGCTTTATCAGCAAttactaaatataattttataaataatttagatTAAGACAGAATCTTGAAATATCCTTAaatcctgttttatttttttttacttgactcTGCACTTAAAAGTTGTAGATCAGATGCAGTACCAGCCAATTCAGCACGTACATTCCCTGACATAAGTCTCATTATTAATCCcgatgtaagagcaacaaataacttgacttctcgttgatcatttggaaaagtagtaGAAGGTAGATTTAAACCAATGAATTATCTGtttaactgcatcccaatcatcacaaaaactgcagacctattggaacctgcacctaggattctcacagaaattccaggattggccagcccagtctccagacatgaacattgagcatgtctggggtaagagggaggaggcattaaagatgaatccaaagaattctGATGAACTCCTGCGGGAACGATTTCTTTGCCTTTCCAGATGACTTATaaaattatttgagtcattgcagatgtgtggatgcagtcctccaagctcatggcgGTCATATACAATATTCTTTCTTttaccactgcaccatgactttatattctatactgcacattatttctgttaggtgacaagacttttgtccaagcaaagtcagaccttactgtcctaattaaataattaaatatcaagacattttggtaaaataagcttaatctagaggcctttgccttttatataaagcaCTTGTGATACCAAATAGTCatgtagaagtcaagttaatatttattGTTCCTAAATCTTGgctaggcgacaagacttttgtcaggtagtgaataACTCCTAGAGAAAAATACCCATCATACAAGTTTCTTTTTGTTAGCAAAAAGCTAATTAACGAAATTTTACATCTTacgcttgtttttttttggttgtttgaaTACATGCAGCACACAACAAACTTAACAATTATTCACAAAAAAAGCACAACAGCAGTTAATGACATGCCTTGAATGTATTGTAAAAACAATAGTTTATTCAGCAAAATGTATCACTCTTAAAACTGGacaaaaagaacaataaaaagcTTCCAGGATTTGATGAATCAGTCGTTTCAGATGAAAATATAATACTCCATGTAATAATTGTCAGCTCACACTCCAAATAAAATCTTGCACATGAA
>TCONS_00009423
CTCCGCGAGCCGgttcgtgtgtgtgtggatttctcTTCGATTTCACTCTACGAACTCCTGCTGTAGGATGACAATTGACCAACAAATTCATTCAGCAATGATATGACCTTCAGTCGTTGACATCGTAAAATTCTACAAACATTCATTTCTGTTGGACTCAGGGAGTTAGACATGGGGACGGCTGTTGATGACATCAGACAACTGTTAAGAGactgTGAGCTGTTTGTTTTTGAGATCCTCCATGATGAGAATCTCAGTATTGCAGCTCGAGAGTCTAGGGAAATTCTCCAAAGAAATTTTGTTGTCGTCCAGAAAAGACACCCACAAGAATTTCCCCACAGACtTGAGTCCAATCCTGAAGACAGTTCAGATGACAACCGCAGCTCCAGTCTGGGACGCTCTGCCCCCTCAGATGATATGTCAGTGGCCTCTGACTACCAGGAGGAAGGAGGCTCTGAGCTTTTTGAAGAGATCCCTCTGGTGGCTGCACAAGACCTGAGTAACATTCTGAAGCAAGGTTACCTGGAAAAAAAGAGACGAgATCACAGTTTCTTCAGCATGGAATGGCAAAAGCGATGGTGTGTTCTGAACAACACCATATTTTATTACTTCGGGAGTGATAAAGACAAGCAGCAGAAGGGCTCGTTTTATATCAATGGTTACAGTGCAGAGTTGGTTCCCAGTTTACGCAAAGACTCCAAGAAGAGCTCCTGCTTTGAGATGAGTGCTCCTGGAAGACGCTCTTACCAgTTCACTGCCAGCAGTCCTCGTGAAGCAAGAGAATGGGTGGACCAGATCAATTTTGTTCTTAAGGATTTGAGCTCAAACTTCATCCCTTTTGATGATGACGAGGAAGAAGAAGAggtggaggaagaggaagagacgTATGATGATATTGAACGAGCAACAACACCACCACCTCCAAGACCTGGAGTAGCGTCTGCACAGGTTACAACCCCGAGAAAAACTCAAAACAGCCATGAAGAGTGGAAAGACCAAGCACTGCCTCAGGAAGACGAAGAAGATGATGAGGAAGAGGACATTTATGAAATACTTCCCGatGATGAAAATTCTGACAACGCTGAAGATTGCAGTGAGAGAACTGGGTCCTCCGATTATGCCAATTATTACCAAGGCTTGTGGGATTGTGAAGCTGAGGGACCGGATGAGTTGGCCTTCCAGAGAGGAGATTTGATCTACATCCTCAGCAAGGAGTATAACATCTATGGATGGTGGGTCGGTGAGCTAGATGGTGCCATCGGCATAGTTCCCAAAGAGTTTTTACACCCTGCTTATATTCTATGAGGTTTGCTTTGTTGCGAAGATCACAGAAGCAAATGTCTTCAAAGTTTAAATGAATTGCATTTTAGTTAATagactaataataattaatagaaatgtttaaacttaaaaaaaaaaagctctaataGTTATCCAATCTGAGAACTAAGTGTTTTTGTGAGTAAgccttttattatttatgtgtgtacACTAAAAGGCTTATTATTGTCCAAGTCTAGTTTTCTGATTTATTCAAATacaagacacacagacacacacacaattgatTTCTACAATACTGTTGCAAACTGGTTGAATTCAAACTAATTTGATAatgttcaaattaatttgtttaaattcagctcaaatcAATTTACATCCACTACTATAAAAAACATAAATCGTTAttaggaatcatctttgaatattttcttCAGTGCATTTATGCAAATAGTGTACATATGAAAACCATTTGTAGCATGAGAAAGTCATTTTAGCAGTTCTCATTTACTGTTATATAAAGACAGTGCTTTATCAGCAAttactaaatatttttttttacttgactcTGCACTTAAAAGTTGTAGATCAGATGCAGTACCAGCCAATTCAGCACGTACATTCCCTGACATAAGTCTCATTATTAATCCcgatgtaagagcaacaaataacttgacttctcgttgatcatttggaaaagtagtaGAAGGTAGATTTAAACCAATGAATTATCTGtttaactgcatcccaatcatcacaaaaactgcagacctattggaacctgcacctaggattctcacagaaattccaggattggccagcccagtctccagacatgaacattgagcatgtctggggtaagagggaggaggcattaaagatgaatccaaagaattctGATGAACTCCTGCGGGAACGATTTCTTTGCCTTTCCAGATGACTTATaaaattatttgagtcattgcagatgtgtggatgcagtcctccaagctcatggcgGTCATATACAATATTCTTTCTTttaccactgcaccatgactttatattctatactgcacattatttctgttaggtgacaagacttttgtccaagcaaagtcagaccttactgtcctaattaaataattaaatatcaagacattttggtaaaataagcttaatctagaggcctttgccttttatataaagcaCTTGTGATACCAAATAGTCatgtagaagtcaagttaatatttattGTTCCTAAATCTTGgctaggcgacaagacttttgtcaggtagtgaataACTCCTAGAGAAAAATACCCATCATACAAGTTTCTTTTTGTTAGCAAAAAGCTAATTAACGAAATTTTACATCTTacgcttgtttttttttggttgtttgaaTACATGCAGCACACAACAAACTTAACAATTATTCACAAAAAAAGCACAACAGCAGTTAATGACATGCCTTGAATGTATTGTAAAAACAATAGTTTATTCAGCAAAATGTATCACTCTTAAAACTGGacaaaaagaacaataaaaagcTTCCAGGATTTGATGAATCAGTCGTTTCAGATGAAAATATAATACTCCATGTAATAATTGTCAGCTCACACTCCAAATAAAATCTTGCACATG

Function

symbol description
skap1 Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP1 (src kinase associated phosphoprotein 1).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04015 Rap1 signaling pathway

ZFIN:

id description
ZDB-GENE-090721-1 Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP1 (src kinase associated phosphoprotein 1).

Ensembl:

ensembl_id ENSDARG00000001498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009421 False 744 processed_transcript 0.46 5 27156943 27163064
TCONS_00009422 False 3020 mRNA 0.38 13 27156943 27206904
TCONS_00009423 True 2906 mRNA 0.39 14 27156995 27206902

Neighbor

gene id symbol gene type direction distance location
XLOC_004763 hoxb1b coding upstream 14109 27141140 ~ 27142834 (+)
XLOC_004762 dre-mir-10a coding upstream 21976 27134869 ~ 27134967 (+)
XLOC_004761 hoxb5b coding upstream 25208 27129659 ~ 27131735 (+)
XLOC_004760 hoxb6b coding upstream 28175 27127139 ~ 27128768 (+)
XLOC_004759 hoxb8b coding upstream 36772 27117609 ~ 27120171 (+)
XLOC_004765 nbr1a coding downstream 6829 27213733 ~ 27229858 (+)
XLOC_004766 tmem106a coding downstream 24308 27231212 ~ 27237032 (+)
XLOC_004767 arl4d coding downstream 36155 27243059 ~ 27245757 (+)
XLOC_004768 dusp3a coding downstream 79090 27285994 ~ 27305823 (+)
XLOC_004769 sost coding downstream 124420 27331324 ~ 27335652 (+)
XLOC_004754 BX469896.1 non-coding upstream 260327 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 322751 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 464892 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 563645 26589644 ~ 26593298 (+)
XLOC_004777 NA non-coding downstream 1170126 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1410797 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1726620 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1806669 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 2105661 29312565 ~ 29373414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06384263_06390553 NA coding CI01000063 null 6384109 ~ 6390590 (+)