XLOC_004761 (hoxb5b)


Basic Information

Item Value
gene id XLOC_004761
gene name hoxb5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27129659 ~ 27131735 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009418
ACAGTGCATTGCTATAATTCATTATTACATCATAAATTGTGCGGCGCTGGATTTTAACGACCAAGATCTACAAAtcaagacattttaaaacatccAAATGAGCTCTTATTTTCTAAACTCGTTCTCAGGGCGCTATCCGAATGGGTCTGACTATCAGTTACTAAATTATGGTACTAACGGCGCTATGAACGCTTCTTACAGGGACTCCACCAGCATGCATTCCGGGTCTTTCGGTTACAACTACAATGGAATAGACCTCAGTGTAAACCGTCCCAACAATGGCCATTTCGGGGCAGTTGGAGATAATTCTCGCGCTTTCCAAAATCCGAGTCAGGAGACCCGGTACAGACAGTCGAGCTGCTCTCTCTCGTCTCCAGATCCTCTGTCTTGTGCCACCAGCGATACTCTGGAATTGAAGGGTTCCTCTCCTCCATCTGATCAGAGCACACCAACCGGCAACAGCAGACTTACCAACAGCAACAATCTTACCAGCAGCAATAGCACACATTTTGCGGACACAGATGAAACCAATGTCTCGTCCGAGACCGAGGAAGGAGCACAGACCACCACCACCAGTCGTACGCAGAAGCAAGAATCTGTGGCGACCTCGACTACAACACCTAACGACGGTCAAACTCCACAGATATTCCCCTGGATGAGGAAGCTGCACATTAGCCATGATATGACTGGACCTGATGGAAAACGGGCTCGAACAGCTTACACTCGCTACCAGACGCTCGAGCTGGAGAAAGAGTTCCATTTCAATAGATATCTGACGCGCAGGAGGAGAATAGAGATAGCTCACGCTCTCTGCCTCTCAGAGAGGCAAATCAAAATCTGGTTCCAAAATCGCAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGTATGAGTCTCGCTACAGCGGGGAGCGcgtttcaaaattgatcaaatcACATCACATCAATTGGAAAATTCGACTACTGTTACAGCGCTGCACCTTCAGCTTGTTCTCACCTGACGACGTGTGATTCTCCCGTGCAACTCAAAATTGTCAGCTGTTGAATGTTATCATATGCTAAACTAGTTACAATTGCCATAAAATGAGTGTGAATGTCAAGTGTGTCAAGTTTATACATTCGTGGAGGAAAGCATGTTCCATGTGAGCTATTCGTGCAACGTATTAGATCTACAAAAATTATGTACAGTACAACTCGCACTACCTAACTATCTTAAGTGATAGTGTAAAAAGAGAATCTTTTGTTGTATCCTTGAACTTGTATTGAAACGTCATGTATTATTCAAGCAACATGCTATATTCTTGTTATGTGCTGGGCTTTTTTGATTTCTCGTCTGATACCTGCATCGCGAGGAAATGAATCTTTTCGCACTTACATTTGTGTACTTAGGCTGCAGCACAAAATTACTTTGGGCTCGTAAGATGTCCTATGAAGAATGTCTTTATACAGTAGTGACCAATATGTTATTTGTAGTGCACAACGTGAGTTATGGACGTTCTGTGTTAAAAGTtggataaaaaatgttttgtcatcGACACGTTATTGGTATCTCTGCCATTTTTTGTATTTGTGTCTAAAATGAAAACGAGTTCATCCAAAAAGAATAATAAAGTTTTCTTTCTGCCA

Function

symbol description
hoxb5b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; cardioblast differentiation; and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; otic vesicle; pharyngeal arch; and pronephric duct. Orthologous to human HOXB5 (homeobox B5).

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000823-6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; cardioblast differentiation; and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; otic vesicle; pharyngeal arch; and pronephric duct. Orthologous to human HOXB5 (homeobox B5).

Ensembl:

ensembl_id ENSDARG00000054030

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009418 True 1626 mRNA 0.43 2 27129659 27131735

Neighbor

gene id symbol gene type direction distance location
XLOC_004760 hoxb6b coding upstream 891 27127139 ~ 27128768 (+)
XLOC_004759 hoxb8b coding upstream 9488 27117609 ~ 27120171 (+)
XLOC_004758 ttll6 coding upstream 14247 27096835 ~ 27115412 (+)
XLOC_004757 srcap coding upstream 37373 27061720 ~ 27092286 (+)
XLOC_004756 fbrs coding upstream 68323 27034594 ~ 27061336 (+)
XLOC_004762 dre-mir-10a coding downstream 3134 27134869 ~ 27134967 (+)
XLOC_004763 hoxb1b coding downstream 9405 27141140 ~ 27142834 (+)
XLOC_004764 skap1 coding downstream 25208 27156943 ~ 27206904 (+)
XLOC_004765 nbr1a coding downstream 81998 27213733 ~ 27229858 (+)
XLOC_004766 tmem106a coding downstream 99477 27231212 ~ 27237032 (+)
XLOC_004754 BX469896.1 non-coding upstream 233043 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 295467 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 437608 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 536361 26589644 ~ 26593298 (+)
XLOC_004744 NA non-coding upstream 637686 26489353 ~ 26491973 (+)
XLOC_004777 NA non-coding downstream 1245295 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1485966 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1801789 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1881838 29013573 ~ 29013690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06347057_06348343 HOXB5B coding CI01000063 null 6346637 ~ 6349040 (+)