XLOC_004766 (tmem106a)


Basic Information

Item Value
gene id XLOC_004766
gene name tmem106a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27231212 ~ 27237032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009427
ACACAGTGTGGCCAGCGGAGGGCGACACCAAACAGCTGAGGTGAATCAAAGAGGGAAGTGAGTGACTGCGCACTCTAAAGTTCATTCGCGAGTAGCATGTGCTGTCTTACAAAACAACCTAAATACGAATTTCCCTAACCAGCGGGACGGAGTGAATCGGTATAGCAGCCACAATGTCTCAATGAATTCACGTTCAAGGTGGAGGTCTCTAGTTTCGCCCCTCCAGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGTCTATTTCACTCCAGATTCCGTTAAAATTGTGGTCACGCACCAAATGAACCTGACCAACCAAAACTTTGTCAGTATCACAGCTAATAATCTTAGCGTGCAAGCGCTGATTTTTGAGACTGTGGTAGGCAAGACCAAGTTCCCCAATGTCACCGTATTGCCTCCTCGATCCCAGAAAACGATTAAAGTTATAGCTGACATACTTATCGATGACACAGGCCTGAATAATTACTGCAAGTCAAGTGCCTTTCAGATTCACACCTTATTCTTGCATTTGCAATTGAATATCAAAGTCTTTTACCTGTCCCATTCGGAGGAGATGTCTACAGATGCCTATGAGTATATTGACTGTGGAGTGAATTCCACTGTGCCTCGCCATTTTCCTCTTGTTTGAGACAAAACCATTGCAGAAGTTTTAAAAATCCAAAAGCTGCTTGAAAACACGGTTGCCAATATTTGCTATATATAGTTTACTAAAGTCAGTTTATGTGTGTAAAGACagaaatgtacaatttaaatGTCCCTGATTATGTTCTGTTAACTTGGATCACTTTtcttgtttgttgatttgttagtgtttactttataaaaaaaacatgtttgtttttttaatttgcacaGCATGAAATTGGTAATACTGTTCCAGTAGTTAATGTAttaataacatgaacaaacaatgaacaataattGATAGTATTTTCATTATTAGTtgtttaataaatgctgaacAAGTATTGTccattcttagttcatgttagtaaatacattaaccaatGGAAACTTATTGTGAAGTGGAATCTGTGAAATTGCACATTTAAACTGTTATTTTTATATGTTGAATTCTTGAGCAAAATCCAATCAGAACTGTTAGACCACTTCTGTTTTTATTAGGATTGTGAGACAGAAAAATAAAGTTTGCTTTCCTGTAAGATA
>TCONS_00009428
ATTCGCGAGTAGCATGTGCTGTCTTACAAAACAACCTAAATACGAATTTCCCTAACCAGCGGGACGGAGTGAATCGGTATAGCAGCCACAATGTCTCAATGAATTCACGTTCAAGGTGGAGGTCTCTAGTTTCGCCCCTCCAGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGTCTATTTCACTCCAGATTCCGTTAAAATTGTGGTCACGCACCAAATGAACCTGACCAACCAAAACTTTGTCAGTATCACAGCTAATAATCTTAGCGTGCAAGCGCTGATTTTTGAGACTGTGGTAGGCAAGACCAAGTTCCCCAATGTCACCGTATTGCCTCCTCGATCCCAGAAAACGGAGCTTTGGCTTCAAAATGCCCAGACCACTTTTCTCATTGAACTATCAAATATGGGAGAGGGAGAAGTTCACAGCCTTAAAAACAATTAAAGTTATAGCTGACATACTTATC
>TCONS_00009429
CCAGCGGGACGGAGTGAATCGGTATAGCAGCCACAATGTCTCAATGAATTCACGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGTCTATTTCACTCCAGATTCCGTTAAAATTGTGGTCACGCACCAAATGAACCTGACCAACCAAAACTTTGTCAGTATCACAGCTAATAATCTTAGCGTGCAAGCGCTGATTTTTGAGACTGTGGTAGGCAAGACCAAGTTCCCCAATGTCACCGTATTGCCTCCTCGATCCCAGAAAACGATTAAAGTTATAGCTGACATACTTATCGATGACACAGGCCTGAATAATTACTGCAAGTCAAGTGCCTTTCAGATTCACACCTTATTCTTGCATTTGCAATTGAATATCAAAGTCTTTTACCTGTCCCATTCGGAGGAGATGTCTACAGATGCCTATGAGTATATTGACTGTGGAGTGAATTCCACTGTGCCTCGCCATTTTCCTCTTGTTTGAGACAAAACCATTGCAGAAGTTTTAAAAATCCAAAAGCTGCTTGAAAACACGGTTGCCAATATTTGCTATATATAGTTTACTAAAGTCAGTTTATGTGTGTAAA
>TCONS_00009430
TGAGTTGTTAGATGTCTTCTAGTAAGGGAGCTCACTGTTTTGACACAGTCATCAACTGCTTGGTATTTTTATATAGAGGAAATGGCCAACTCTAAACAGACAGCTCTTTGCGTCACACTTTTTCAAGGTGGAGGTCTCTAGTTTCGCCCCTCCAGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGTCTATTTCACTCCAGATTCCGTTAAAATTGTGGTCACGCACCAAATGAACCTGACCAACCAAAACTTTGTCAGTATCACAGCTAATAATCTTAGCGTGCAAGCGCTGATTTTTGAGACTGTGGTAGGCAAGACCAAGTTCCCCAATGTCACCGTATTGCCTCCTCGATCCCAGAAAACGATTAAAGTTATAGCTGACATACTTATCGATGACACAGGCCTGAATAATTACTGCAAGTCAAGTGCCTTTCAGATTCACACCTTATTCTTGCATTTGCAATTGAATATCAAAGTCTTTTACCTGTCCCATTCGGAGGAGATGTCTACAGATGCCTATGAGTATATTGACTGTGGAGTGAATTCCACTGTGCCTCGCCATTTTCCTCTTGTTTGAGACAAAACCATTGCAGAAGTTTTAAAAATCCAAAAGCTGCTTGAAAACACGGTTGCCAATATTT
>TCONS_00009431
GTAGCTCTGCACTCTTCCaagctgttttaatttaaaattaagtgTATGTAAAACCGAGAGCATGCTGACCTGCATAAACATGACAGTAAAGTGAAATGTAtcttaaacataaaaacaagcaCGTTTAAACAGGAGGTCACAGAAAGTGTGTCATTTAAGATTTTTGATCAAATTATGTCATTTGTTTTATAATGATCTTTGGAGTTTTattgttcatgttttattgttatgtagctTTATTGTTCACTTGAGGTCATTTACTGGTTTACAGTGAGAACTACAGGGGTTTTTAAGTCAGTTTGGGTCATATTGTAATATATAACTTGAGCAAtactgtcacacacacaaacaacaaacattttcCTAGTCAGACATACATCAGATAAGTTTCATGAAGCTCTCTTATAGTTCAAGGTGGAGGTCTCTAGTTTCGCCCCTCCAGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCT
>TCONS_00009432
TTCGCCCCTCCAGAAATACAACATTATGTCTCAAAATAAAAATGGAGAGAAAAGGAGGCTTTCCAAATGGTTGGACTATGGCAGTATCAATGGGGAAGGACAGTCGGATCCGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGaagctgtatgtgtgtatatcgGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGTCTATTTCACTCCAGATTCCGTTAAAATTGTGGTCACGCACCAAATGAACCTGACCAACCAAAACTTTGTCAGTATCACAGCTAATAATCTTAGCGTGCAAGCGCTGATTTTTGAGACTGTGGTAGGCAAGACCAAGTTCCCCAATGTCACCGTATTGCCTCCTCGATCCCAGAAAACGATTAAAGTTATAGCTGACATACTTATCGATGACACAGGCCTGAATAATTACTGCAAGTCAAGTGCCTTTCAGATTCACACCTTATTCTTGCATTTGCAATTGAATATCAAAGTCTTTTACCTGTCCCATTCGGAGGAGATGTCTACAGATGCCTATGAGTATATTGACTGTGGAGTGAATTCCACTGTGCCTCGCCATTTTCCTCTTGTTTGAGACAAAACCATTGCAGAAGTTTTAAAAATCCAAAAGCTGCTTGAAAACACGGTTGCCA

Function

symbol description
tmem106a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM106A (transmembrane protein 106A).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5129 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM106A (transmembrane protein 106A).

Ensembl:

ensembl_id ENSDARG00000045075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009427 False 1473 mRNA 0.40 8 27231212 27237032
TCONS_00009428 False 750 processed_transcript 0.46 7 27231295 27234421
TCONS_00009429 False 865 mRNA 0.44 8 27231350 27236596
TCONS_00009430 False 927 mRNA 0.44 8 27231607 27236557
TCONS_00009431 False 710 lncRNA 0.39 3 27231744 27232651
TCONS_00009432 True 779 mRNA 0.45 7 27232173 27236551

Neighbor

gene id symbol gene type direction distance location
XLOC_004765 nbr1a coding upstream 1354 27213733 ~ 27229858 (+)
XLOC_004764 skap1 coding upstream 24308 27156943 ~ 27206904 (+)
XLOC_004763 hoxb1b coding upstream 88378 27141140 ~ 27142834 (+)
XLOC_004762 dre-mir-10a coding upstream 96245 27134869 ~ 27134967 (+)
XLOC_004761 hoxb5b coding upstream 99477 27129659 ~ 27131735 (+)
XLOC_004767 arl4d coding downstream 6027 27243059 ~ 27245757 (+)
XLOC_004768 dusp3a coding downstream 48962 27285994 ~ 27305823 (+)
XLOC_004769 sost coding downstream 94292 27331324 ~ 27335652 (+)
XLOC_004770 meox1 coding downstream 225193 27462225 ~ 27469267 (+)
XLOC_004771 etv4 coding downstream 299063 27536095 ~ 27568694 (+)
XLOC_004754 BX469896.1 non-coding upstream 334596 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 397020 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 539161 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 637914 26589644 ~ 26593298 (+)
XLOC_004777 NA non-coding downstream 1139998 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1380669 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1696492 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1776541 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 2075533 29312565 ~ 29373414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06420629_06423287 NA coding CI01000063 null 6420471 ~ 6423400 (+)