XLOC_004796


Basic Information

Item Value
gene id XLOC_004796
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 29312565 ~ 29373414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010745
GTTCAATTGCGGCCGTTTCGAACCGATGagtttgattcattgattcaccGAGTCATTTTTTCGCGAATCAAACCGCCATCACTGCTGTGTATGACGTGGTGGTGTATAACAAAGTGTAAATAACGTGGCGTTTTAAGATGAATGCTTTCGAGTTGCTGTTTTCTGTCGGAGTATGAACTGAACATGAATTGACTTCAGTGACGAACTTTAAAACCATCGATGAAGTCTTTTGCAAGAGCAGAAACTGTGCAGGATTCCAAGAACAGCTTGGGCTATCAGGGACTAAACGACTGGTCCTCGCAGGACATTGAGCCCTGGTTTGGTGGCGAGTCTCTGCGAGCAGATGGCTGGATTCCCTCACAGCCCCGCAGCCGTGACTGAAATGCTTTCTCATGCACAGAGCTGACCATTCATGCACACGTGTGCTCATCGCCCCCTCCCTCCCGTCTTGCTCTCTCTTTTATGGAAAACGCGCTCCGTAATGGGCACAACAGGACCCGTTCTCCATCCAGATTAAAATCACCCAGGCAGTCATTTCCCAGAAGCAGAAATGCATATCAGTTCCATTTAAACTCGCTCTCCTTCTCTGACAGTTTTGAGGAAATCTCGAGGCAAGCGTGTGAAGCACGACTAATGGAAAACTTCACAGGATTCACTCGTTCACTTAAGGCGAGACACTGGAggcaaaaaaaacatttcatgcgACTCAATTTTTGGATTTTCATATACTGCTTTTCCAGTCTAACTTAAAGAAATTATTCAGGATACACATTTCAGCATTTCTTTTGTCACACCAAATCAATTTTTCTGTGGATTTCATTGATGGTTGGTTAGGATTCAATAACATTTgactgcaataaaataaaataatttaaactgtGGGGTtgcaaaaaatgaaatgtgtttttgaaatgtGTGAATATTTGAACATGTTTGTTCAATGTGGACCAATTTGAACTGCCACATGAAAACAGGACTATAgagcagctcctccccttaaaaaaacagcaaatagcattttgttttatcacagctctgccagtgagagtgattgAGCAGGACATGTTAGATacaagagagcatttgattggtcaaacaAATTGATgattgatgagaaactaaagtatgaggagtcctttaaaaaattataaataagttTGAATGTTTATAAATTAAAGTGTAATTTTGTTACTGTTTTGAAGCACAATCGAAA
>TCONS_00009476
GTTCAATTGCGGCCGTTTCGAACCGATGagtttgattcattgattcaccGAGTCATTTTTTCGCGAATCAAACCGCCATCACTGCTGTGTATGACGTGGTGGTGTATAACAAAGTGTAAATAACGTGGCGTTTTAAGATGAATGCTTTCGAGTTGCTGTTTTCTGTCGGAGTATGAACTGAACATGAATTGACTTCAGTGACGAACTTTAAAACCATCGATGAAGTCTTTTGCAActaAAAATCAACAGAATTGAATGAAAAACGAAGTCTCAAGCCAAAGGGGTTCTGATGGATGTGTCCACTCTTACGTGAAAGAATACGTTCAATTCGACATGATCATAGTAAAAGAGCAGAAACTGTGCAGGATTCCAAGAACAGCTTGGGCTATCAGGGACTAAACGACTGGTCCTCGCAGGACATTGAGCCCTGGTTTGGTGGCGAGTCTCTGCGAGCAGATGGCTGGATTCCCTCACAGCCCCGCAGCCGTGACTGAAATGCTTTCTCATGCACAGAGCTGACCATTCATGCACACGTGTGCTCATCGCCCCCTCCCTCCCGTCTTGCTCTCTCTTTTATGGAAAACGCGCTCCGTAATGGGCACAACAGGACCCGTTCTCCATCCAGATTAAAATCACCCAGGCAGTCATTTCCCAGAAGCAGAAATGCATATCAGTTCCATTTAAACTCGCTCTCCTTCTCTGACAGTTTTGAGGAAATCTCGAGGCAAGCGTGTGAAGCACGACTAATGGAAAACTTCACAGGATTCACTCGTTCACTTAAGGCGAGACACTGGAggcaaaaaaaacatttcatgcgACTCAATTTTTGGATTTTCATATACTGCTTTTCCAGTCTAACTTAAAGAAATTATTCAGGATACACATTTCAGCATTTCTTTTGTCACACCAAATCAATTTTTCTGTGGATTTCATTGATGGTTGGTTAGGATTCAATAACATTTgactgcaataaaataaaataatttaaactgtGGGGTtgcaaaaaatgaaatgtgtttttgaaatgtGTGAATATTTGAACATGTTTGTTCAATGTGGACCAATTTGAACTGCCACATGAAAACAGGACTATAgagcagctcctccccttaaaaaaacagcaaatagcattttgttttatcacagctctgccagtgagagtgattgAGCAGGACATGTTAGATacaagagagcatttgattggtcaaacaAATTGATgattgatgagaaactaaagtatgaggagtcctttaaaaaattataaataagttTGAATGTTTATAAATTAAAGTGTAATTTTGTTACTGTTTTGAAGCACAATCGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010745 False 1213 lncRNA 0.41 2 29312565 29373414
TCONS_00009476 True 1326 lncRNA 0.40 3 29312565 29373414

Neighbor

gene id symbol gene type direction distance location
XLOC_004795 bms1 coding upstream 42203 29240124 ~ 29270362 (+)
XLOC_004794 mxtx2 coding upstream 74750 29236274 ~ 29237815 (+)
XLOC_004793 adgra1a coding upstream 100967 29131689 ~ 29211598 (+)
XLOC_004792 gabrz coding upstream 207040 29054907 ~ 29105525 (+)
XLOC_004791 AL732488.1 coding upstream 298875 29013573 ~ 29013690 (+)
XLOC_004797 BX072570.2 coding downstream 58661 29432075 ~ 29432191 (+)
XLOC_004798 gfra1b coding downstream 390132 29763546 ~ 29818209 (+)
XLOC_004799 BX004794.2 coding downstream 438430 29811844 ~ 29811960 (+)
XLOC_004800 CU464184.2 coding downstream 586526 29959940 ~ 29960054 (+)
XLOC_004801 CU464184.1 coding downstream 597099 29970513 ~ 29970629 (+)
XLOC_004786 NA non-coding upstream 366415 28933524 ~ 28946150 (+)
XLOC_004779 NA non-coding upstream 694600 28617701 ~ 28617965 (+)
XLOC_004777 NA non-coding upstream 931310 28377030 ~ 28381255 (+)
XLOC_004762 dre-mir-10a non-coding upstream 2177598 27134869 ~ 27134967 (+)
XLOC_004806 CR932360.2 non-coding downstream 1056419 30429833 ~ 30432964 (+)

Expression


Co-expression Network