XLOC_004746 (chad)


Basic Information

Item Value
gene id XLOC_004746
gene name chad
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26512569 ~ 26525699 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009393
ATGTTCCTGCCGCCACAGTTTCTCGGAGTAAAGCAGAAACCAGACCAAACATCCAGACAGCAATAAGCTCAACATGTACACTTTTCATGTCTTACTGGTGCTAGTGTGTCTACAGTTTTGTGCTCACACTGCTTTTGCAGCTCCAACTCAGTGCCCAAGCCAGTGCCACTGCCATGGGGACCTGCAGCATGTTATTTGTGACAATGTTGGGCTAAAGAAGATCCCTCGCATATCTGAAGCCACGCGTCTCCTCAACCTGCAACGCAACAACTTGGGGAATCTACCAACTGGGGGCTTCAGTGAGATGAAAGGGCTCATTTCTCTGCACCTGCAGCATTGCCAGATCCGAGAGCTCTCCGGCCAGGCTTTCAAAGGGCTCAACAAGCTCATCTACCTCTACCTGTCTGATAATGAGATCAGCACCATTAAACCCGGTGCTTTTGAGGATCTAACAGAACTCACCTATCTCTACTTGGACGGCAACCAAATCACAAGCCTTCCGAAGGGCATCTTTTCCCCCATGATCAACCTGTTCATCCTGCAGCTCAACAACAACAAGCTTCGAGAGCTGCAGCCTGGTACTTTCAAAGGTGCTAAGGATCTCCGCTGGCTTTATATGAGCGGCAACGAGCTGAGCTCCATACAGCCTGGTTCTCTTGATGAAGTGGAGAACTTGGCCATTCTAACCCTGGACCAGAACAACCTGTCCACATACCCTCTCCCGGCTATGAGCAAGCTGCGTGTTGTGGAGGAACTCAACCTCTCCAAAAACCCTCTCAGCCTCATCCCTGACCATGCATTCCGAAGCTTCGGACGCTACATGGAGAAGCTCCATCTAAATGACATGAGCCTGGAGAAGTTTTCCAATGCTGCCTTTGAGGGAGTGACGGCTCTCAAATCTCTGCATCTGGAGAACAACAAGCTGAGGTCACTACCAAACAGCCTTGAGTTCAGCACCATCCAAAACATCACTCTGTTTAACAATCCCTGGAGCTGCACCTGCCCATTAACAAACCTCAGAAAATGGATGGACACTACTCGTAATCGCCCAGATGCAGTTTGCGCTTCACCTGCCAACCAGAAAGGAAAGCAAATAAGAGACAGCACTGCTTTCACCCGCTGCAAGGGAAAAACAAAGAGGGCCAGGAAGGGGACACGACTTTGAGATGGAGGACAGGGAGAAGAATAAGAAGCCTGTCCAGGTGTCAAGACTTCAATGTGTAGAAAAGGGAAAGAAATGCTGCCTTCAACATTGGGACTGTCTATTTCCTCTTTCActcttttttttgtgtgacaTATAGATGCGCTGACTCAGTTTATAGTATATAACGTGAATAGCATACATATGTTTTCGCAGGCATTAATGAAACACCCAGAAGGAGCAACTGTGTACACCGCAAAGAAAATATGCCTCAAACTCTAAATATGCAATGATATGTATAAATATCCTGGTGACAAATCTAACATTAGGACAGGACTAGTTCCTACAAAGCAGAAAAAGTTGACTTACGAGAAATGATGGAattaatttgtattgttttatttagcaACAGATTTGTTTAATTGACCCTGACCAAATGTTTGAAGTCGATTTTGAAACAATGTTTAACTCCATGACAAAGCATTTCAATTTAATTATATACACTTCTACTTTTAAATTCACATGAAATCAGAATTGTATTTTTCAGCATATACTGTAAATGTAATATGATGCACAAAACATCTAAATATGTTTTAGCAGACTGTTATTAGATTGAACAGACTGGACATTCAGACTGAACTTGATATATTCGACTGATTTCATTTTAAACTCCGAttattaaaacacttaaaatgaGACAACCATATATAAGCACAACAGAGCATTTCATCCTTGGCTTTACATGTCTCATCATGACTTCTTGCAAGGAATTTTTCTGCCTTTGTAAACATAAACCTAACCTGACCGTGACTAAAACTGACACATATTCAAGATGTGACCCGACCTGACCTCTTTCCTTACATCTCTGACCTAAGTCATATGCAACATAGGCCAGGAAAAAAAGCATGGACTCCATATGTCCATGTATAATGCAATGTAAACACTCTACAGAGGTACAATATGCAGCCAGTCATTATCAAAAGCACATTATGTTTATAGGAATTGCTGTATTTAAAATAGATGTGAAGGATGATGCAATTGCCACAGAAGAAGAGGATTTACAAAGAGCAGGTAAAATTACAAAGACAAATGGATGTTCTCCAGTCTACTGTTATTAATTTGTGATTACAATGATTTTATGCttaataaaacacatataaaacacCAGTAGTAATGCTTTTTTAAGAGAATGAGAACACTGCATCCACTAACAAGTTGGAACAAAACATCAGTACAACTGGATATTTGTTCAGATTTTGTTACTTTCCCCATACCCTgtttttaaaggtatagtttgTGCAAAAAATGATAATATTTAGCTTCTTAGTGTGAAGTTTGAATAATCTAGAGAACCTGTTTCAACTATAAAGAACCTTTTATGCAATTTAAAAGGTTTTGTGAATGTCGAAGTTTCAATATGCAACTATCAATCACAATaaagcacatttatttttaaaaa

Function

symbol description
chad Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in notochord. Orthologous to human CHAD (chondroadherin).

GO:

id name namespace
GO:0050919 negative chemotaxis biological_process
GO:0007411 axon guidance biological_process
GO:0048495 Roundabout binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05165 Human papillomavirus infection
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-040426-1130 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in notochord. Orthologous to human CHAD (chondroadherin).

Ensembl:

ensembl_id ENSDARG00000045071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009393 True 2600 mRNA 0.41 4 26512569 26525699

Neighbor

gene id symbol gene type direction distance location
XLOC_004745 armc7 coding upstream 17718 26491637 ~ 26494851 (+)
XLOC_004744 NA coding upstream 20596 26489353 ~ 26491973 (+)
XLOC_004743 ndel1a coding upstream 25206 26467847 ~ 26487363 (+)
XLOC_004742 itgb3b coding upstream 50825 26434478 ~ 26461744 (+)
XLOC_004741 mmrn2b coding upstream 564090 25945560 ~ 25948479 (+)
XLOC_004747 faap100 coding downstream 13162 26538861 ~ 26547248 (+)
XLOC_004748 NA coding downstream 63945 26589644 ~ 26593298 (+)
XLOC_004749 si:dkey-148d16.5 coding downstream 83184 26608883 ~ 26611971 (+)
XLOC_004750 arhgap12b coding downstream 96207 26621906 ~ 26726048 (+)
XLOC_004751 NA coding downstream 166120 26691819 ~ 26692051 (+)
XLOC_004738 CR932018.1 non-coding upstream 864326 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 1008189 25502406 ~ 25504380 (+)
XLOC_004733 CR932077.1 non-coding upstream 1082198 25312018 ~ 25430371 (+)
XLOC_004731 CR848736.1 non-coding upstream 1297842 25201543 ~ 25214727 (+)
XLOC_004752 NA non-coding downstream 211732 26737431 ~ 26834192 (+)
XLOC_004754 BX469896.1 non-coding downstream 368622 26894321 ~ 26896616 (+)
XLOC_004762 dre-mir-10a non-coding downstream 609170 27134869 ~ 27134967 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01093025_00000136_00001334 CHAD coding CI01093025 null 4 ~ 1334 (-)