RNA id: TCONS_00009393


Basic Information

Item Value
RNA id TCONS_00009393
length 2600
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_004746
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26512569 ~ 26525699 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTCCTGCCGCCACAGTTTCTCGGAGTAAAGCAGAAACCAGACCAAACATCCAGACAGCAATAAGCTCAACATGTACACTTTTCATGTCTTACTGGTGCTAGTGTGTCTACAGTTTTGTGCTCACACTGCTTTTGCAGCTCCAACTCAGTGCCCAAGCCAGTGCCACTGCCATGGGGACCTGCAGCATGTTATTTGTGACAATGTTGGGCTAAAGAAGATCCCTCGCATATCTGAAGCCACGCGTCTCCTCAACCTGCAACGCAACAACTTGGGGAATCTACCAACTGGGGGCTTCAGTGAGATGAAAGGGCTCATTTCTCTGCACCTGCAGCATTGCCAGATCCGAGAGCTCTCCGGCCAGGCTTTCAAAGGGCTCAACAAGCTCATCTACCTCTACCTGTCTGATAATGAGATCAGCACCATTAAACCCGGTGCTTTTGAGGATCTAACAGAACTCACCTATCTCTACTTGGACGGCAACCAAATCACAAGCCTTCCGAAGGGCATCTTTTCCCCCATGATCAACCTGTTCATCCTGCAGCTCAACAACAACAAGCTTCGAGAGCTGCAGCCTGGTACTTTCAAAGGTGCTAAGGATCTCCGCTGGCTTTATATGAGCGGCAACGAGCTGAGCTCCATACAGCCTGGTTCTCTTGATGAAGTGGAGAACTTGGCCATTCTAACCCTGGACCAGAACAACCTGTCCACATACCCTCTCCCGGCTATGAGCAAGCTGCGTGTTGTGGAGGAACTCAACCTCTCCAAAAACCCTCTCAGCCTCATCCCTGACCATGCATTCCGAAGCTTCGGACGCTACATGGAGAAGCTCCATCTAAATGACATGAGCCTGGAGAAGTTTTCCAATGCTGCCTTTGAGGGAGTGACGGCTCTCAAATCTCTGCATCTGGAGAACAACAAGCTGAGGTCACTACCAAACAGCCTTGAGTTCAGCACCATCCAAAACATCACTCTGTTTAACAATCCCTGGAGCTGCACCTGCCCATTAACAAACCTCAGAAAATGGATGGACACTACTCGTAATCGCCCAGATGCAGTTTGCGCTTCACCTGCCAACCAGAAAGGAAAGCAAATAAGAGACAGCACTGCTTTCACCCGCTGCAAGGGAAAAACAAAGAGGGCCAGGAAGGGGACACGACTTTGAGATGGAGGACAGGGAGAAGAATAAGAAGCCTGTCCAGGTGTCAAGACTTCAATGTGTAGAAAAGGGAAAGAAATGCTGCCTTCAACATTGGGACTGTCTATTTCCTCTTTCActcttttttttgtgtgacaTATAGATGCGCTGACTCAGTTTATAGTATATAACGTGAATAGCATACATATGTTTTCGCAGGCATTAATGAAACACCCAGAAGGAGCAACTGTGTACACCGCAAAGAAAATATGCCTCAAACTCTAAATATGCAATGATATGTATAAATATCCTGGTGACAAATCTAACATTAGGACAGGACTAGTTCCTACAAAGCAGAAAAAGTTGACTTACGAGAAATGATGGAattaatttgtattgttttatttagcaACAGATTTGTTTAATTGACCCTGACCAAATGTTTGAAGTCGATTTTGAAACAATGTTTAACTCCATGACAAAGCATTTCAATTTAATTATATACACTTCTACTTTTAAATTCACATGAAATCAGAATTGTATTTTTCAGCATATACTGTAAATGTAATATGATGCACAAAACATCTAAATATGTTTTAGCAGACTGTTATTAGATTGAACAGACTGGACATTCAGACTGAACTTGATATATTCGACTGATTTCATTTTAAACTCCGAttattaaaacacttaaaatgaGACAACCATATATAAGCACAACAGAGCATTTCATCCTTGGCTTTACATGTCTCATCATGACTTCTTGCAAGGAATTTTTCTGCCTTTGTAAACATAAACCTAACCTGACCGTGACTAAAACTGACACATATTCAAGATGTGACCCGACCTGACCTCTTTCCTTACATCTCTGACCTAAGTCATATGCAACATAGGCCAGGAAAAAAAGCATGGACTCCATATGTCCATGTATAATGCAATGTAAACACTCTACAGAGGTACAATATGCAGCCAGTCATTATCAAAAGCACATTATGTTTATAGGAATTGCTGTATTTAAAATAGATGTGAAGGATGATGCAATTGCCACAGAAGAAGAGGATTTACAAAGAGCAGGTAAAATTACAAAGACAAATGGATGTTCTCCAGTCTACTGTTATTAATTTGTGATTACAATGATTTTATGCttaataaaacacatataaaacacCAGTAGTAATGCTTTTTTAAGAGAATGAGAACACTGCATCCACTAACAAGTTGGAACAAAACATCAGTACAACTGGATATTTGTTCAGATTTTGTTACTTTCCCCATACCCTgtttttaaaggtatagtttgTGCAAAAAATGATAATATTTAGCTTCTTAGTGTGAAGTTTGAATAATCTAGAGAACCTGTTTCAACTATAAAGAACCTTTTATGCAATTTAAAAGGTTTTGTGAATGTCGAAGTTTCAATATGCAACTATCAATCACAATaaagcacatttatttttaaaaa

Function

GO:

id name namespace
GO:0050919 negative chemotaxis biological_process
GO:0007411 axon guidance biological_process
GO:0048495 Roundabout binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05165 Human papillomavirus infection
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-040426-1130 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in notochord. Orthologous to human CHAD (chondroadherin).

Ensembl:

ensembl_id ENSDART00000066264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010940 lncRNA upstream 20596 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1008189 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1039363 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010939 lncRNA upstream 1104049 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010741 lncRNA upstream 1122978 25382277 ~ 25389591 (+) True XLOC_004733
TCONS_00010942 lncRNA downstream 63945 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 63945 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010943 lncRNA downstream 112428 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 166120 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010944 lncRNA downstream 211732 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009392 mRNA upstream 17718 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009390 mRNA upstream 25206 26467847 ~ 26487363 (+) False XLOC_004743
TCONS_00009391 mRNA upstream 26087 26471712 ~ 26486482 (+) True XLOC_004743
TCONS_00009389 mRNA upstream 50825 26435918 ~ 26461744 (+) True XLOC_004742
TCONS_00009388 mRNA upstream 75317 26434478 ~ 26437252 (+) False XLOC_004742
TCONS_00009394 mRNA downstream 13162 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009395 mRNA downstream 83184 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009396 mRNA downstream 96207 26621906 ~ 26726048 (+) False XLOC_004750
TCONS_00009397 mRNA downstream 96311 26622010 ~ 26725781 (+) False XLOC_004750
TCONS_00009398 mRNA downstream 106749 26632448 ~ 26726048 (+) False XLOC_004750
TCONS_00009383 other upstream 864326 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1034663 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1260782 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 1946977 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2094229 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 609170 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 631244 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 693294 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 705596 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2419833 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01093025_00000136_00001334.mRNA True 954 mRNA 0.47 2 CI01093025 4 ~ 1334 (-)