RNA id: TCONS_00010941


Basic Information

Item Value
RNA id TCONS_00010941
length 3252
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_004748
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26589644 ~ 26593298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacattttatgaTAAAATTCATACATTATCATTTTGCAATCTGTACATTGCAAGAAACTGCATCAAActtcaaaaatgaaataaaaaagaaatgaaaaggaCAGTCTGATCAAGACTATTCATTTCCAGAACACTTAGCTTAACAATCTCCATAGCCTAGTGACATATTTGACACTTTACATCAATACTGTTGACAATACACCCAAAACATCTGATGAAAGAGCAGGTTTCAGCACGTTAAAAtgtatgtgtactgtatattAAAGCATGCAGGTGTTGTAGACTAACTATTATGGcagaaaataaacaacaactgtTAAAAATGGACCTTGTTTTTAGCTTTAATCTGAAGACGTTACGACAGAGGTCTGCACTTTTGGCCAGCTTGAAAGCTATATTTTTATCGAATACATGGGGTGTTGTGTAAGCATATTTTCCCTCAGCAAACAAGTTTTTCCAGTAATACTGAATTTGATTTTATTGATTTCTTCCAAACAGTTAAAACAGGGCCAGATTTTATGATATCGATATACCATCTGTCAACTGTCCATGCACCGGATCACCTTTATAATATGACAACATCCCAgcatataacattatatatactTAACACATTTCGCATGCTTCCGAGTTGGCATTCCAAACCACCAACTTCATCGTTTTTCTgaacaccatatatatatatatatagatctttTCACGaagaaaatatctttttttttttttaaatccatataTCATTTTCATTAGATCCTAAACCACACGAAACCTAAAGAAGAATGGCGTATTTCTAAAAGTATAAGGAGACAAACTAAATTCCCACAGTCTCACGTGCTGGAAAGCATCAGCAGTCAATGTGACGTCCGTATCAGTTTCCTAAACCGTCTTATATAAAACTTGAGACTGCGCATGGCTTTTTCGTTTGCCTCACATGGGGTTTGACTCTAAAAATAGAACAAACACAGTGTGAATTACAATGCAGGTAGGCGCAAACTTAAAAGTGCTTAGGGGCAGGAGTGGAAAAGCGAAATAGGGATGAACCACTGAAAACAAGAACAATAACAATCTCAGGGGGAAACGGGCACATTCAGTATCTGTGTCAAGGAACAGAACTGATTTAGTCAAAACAAGTATTTCTCAACCGTCTGTATTCATAAAAGAGTAATCTAGGAGCGAAGACACGTACAGTAGGGCACGACGGGTCAAAGGCACAACACCAGACAAACAAATTGGGACGGAGAGAGAGACTTTAACGCTGCCACCTGGAACTAATTCCAATATTCTGCGTTGGAAGTGGACCTGAAAGCTATCTGAACAAAGGGAAAGTACAAACAGGATCCTGTGAGAGGGCCAAGGTCCCATTACAGGAGCTTCGGTGACTAATAAGTGGGCTTGAACAAATAAACTCTCTCCaggagggggaaaacattaacacaaACAAAGAAACAGAAAAGCCAACGACCATTTAAACAGATTATACTGTAGCTCACAAACTCAAGTACATCGTCTTCTTGATATGATCAACTAAAGGACGTGAGTTTAATGCGATAAAGAGAGGAACAGACAACACTTTGAAACACTGCGGACCATAAAAACGTCCATTTACATGATGCCATCTTAGACTGACCCCTAGATTCAACAACAGTTTATAAACAGATATGAATAATCAAAATAGAGCCTGGATTACCGTTCAAATACTGACAATTCGCAATGTAGTCACAGTAGATTCAGAGAAACCACAAcgaatttatcaaaaataaacacaaattaaagggaaagttcacctcTAAAATGAAACTCACGTCGCAAAAAACAAAACGTCTGAATACAAGAAAATTGACCAtcgaaacacaaatgaagattttttttctaaccTGAGAAATTTTTGTCTCTCGATTGAAAATCCTCTCACAAAACTTCAAAAGGTTTATAGATATttcaaaaaaatcaatcaatgcTTGATTCACTTTATTCTGAAGAGATATAATGACTTTATTTGATGAAGAttgaattttatttacATATTAACATTGATTATTTAGGAATGTTTAAAAATTCAAATTTCAGGATGCTTGTGATTTAGCTTCTGTTTATGTTTGCggttcaataaaaaaatgtacataataaataatgtaaatgaacaaaatgtaaataataagcCTATTTAACATTTGATTATCAAACAAGTGACTGTGTGCATCTATGTAAATCAACCGGTTGATTTCtattactttttatgttttgatctctttaaaatacattttgaaatctTCAAGTTTTGGCTGAATGTCAATATTTGTctcatattgaaaaaaaatcttcatttgtaTTGAGATGAATAAAGCCTTAAGGAAAAATCttaatttacatattaacatTGATTATTAATGAATGTTTCCAGAATTCACCTTTTAGGAAGCTTGCCTGATGCTTGAGAACCAATCAGGTTCAATCTTCAGTCGTGGTTTATTCAAGGATCTTAAAAAAAGATGAGATTTACATCAAGCGGGTACAGTTTAGCTTCTGTTTATGTTTGCTGTTCAATATAAAAACGTAAATGAAAGCCTATTTAATATTTGATTATCAAATAAGTGACTGTGTGCATCTATTCAAATCAACTGGTTGATTTAATACCTAGTTTTATGTTTTAATCAACAAATAAACTTTCATTTGCATTTGATAAAAATTTCTCTTATTGAAAAAtacttcatttgtgtttttaagaTGAAGTCTTATGGAATATTTTCATTTTGAGGCGAACCAACTCTTTAAACAACGAGGGCAACCAAAGCCTTCAAAGATGAGGCTTCAATGTTAAAcatatcagataaaaaaaaagtcaagaacGTTCCACAACAAATGCAGCCCTTTACATTCATAAACATTCTGCTGATGTTATCAGACTTTGTTTAAACCAAAAACAGaaaatttaaacatttcaatagcCAAACTGTTATGGGGAGAGCTATATCTGAATTTAAACTTGTCAgacaagtgcaaaaaaaaaaaaaaaaaaagatgcaacaAAGAGCCACTAATGCAGTTTTGCCCTGACTCAAAACTTGAGGCCACTTTGTCCATCAACAGTCTCCCGAAGCACCTGGACTATGATACCGCTAACACTAGAAGCCTCCTGCTTATTTCCAGTCATCGACAAAGAGTTCAAAGGTAAAACAAACCATTTCACATGTTGGCAACCAggctttaaagaaagaaaaaaaagatcttCAAGGTTCGATTTAGAACCTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010940 lncRNA upstream 97671 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1085264 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1116438 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010939 lncRNA upstream 1181124 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010943 lncRNA downstream 44829 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 98521 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010944 lncRNA downstream 144133 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009402 lncRNA downstream 301023 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009425 lncRNA downstream 620462 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009394 mRNA upstream 42396 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009393 mRNA upstream 63945 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009392 mRNA upstream 94793 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009390 mRNA upstream 102281 26467847 ~ 26487363 (+) False XLOC_004743
TCONS_00009395 mRNA downstream 15585 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009396 mRNA downstream 28608 26621906 ~ 26726048 (+) False XLOC_004750
TCONS_00009397 mRNA downstream 28712 26622010 ~ 26725781 (+) False XLOC_004750
TCONS_00009398 mRNA downstream 39150 26632448 ~ 26726048 (+) False XLOC_004750
TCONS_00009399 mRNA downstream 77480 26670778 ~ 26697585 (+) False XLOC_004750
TCONS_00009383 other upstream 941401 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1111738 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1337857 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2024052 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2171304 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 541571 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 563645 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 625695 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 637997 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2352234 28945532 ~ 28945646 (+) True XLOC_004786