RNA id: TCONS_00009396


Basic Information

Item Value
RNA id TCONS_00009396
length 4670
RNA type mRNA
GC content 0.46
exon number 18
gene id XLOC_004750
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26621906 ~ 26726048 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCACGCAAACGCCTCTGCCTGCTTTCCACTGAGCAGAGGGGGGATCAAGAGCCTTGCAACCCCACGAGGGGGCCTGATGCGGTAACACAGGAGCATCAGCAGTCTGACAGAGCTTCACACAGGACAGGCGGGAGCGCGCAGTGACGCGAACGCGCACTCGCTCACCCACGGAGACCGACTGCGATTGGAAGCGCGAGGCGGTCAGATCGTGTGTTTTGTGTTGCTGCCGAGCACTATCTTTTTTACACGAGTGCCGAGGACTGCAAAGGGAAAAGTTTATTTCAGAGACTCTCCAACTAACGGGCATGGCCGCTCCCAGATCCCCCTGAACGCCAGTTGTGCGGACAGAGCAAGAGATGAGGATCCACTTACAGCCTGTCTCCTGAATAAGACAAGGACTGTTTGAGCCATGAGTGAACGGGATGGCCGCTGTGATTTGTCCATCGCCCCGGGACAGGTGTATATTGAAGTGGAGTACGATTACGAGTACAAAGCGAAAGACAAACTCATTTCCATACGGCAAGGCGAGTGCTACATGTTAGTTCGGAAAACCAATGAGGACTGGTGGCAAGTTCGTCGGGAGGAGGGCACCAAGGCTTTTTACGTCCCTGCTCAGTATGTCCGAGAGGTCCGACGTGCCCTTATGCCACCTCCCAAACCTCGAGCAAAACCCCCAAATGTTCTCGAGATCACCCATTGCAGATCTTCGAATGAAAATCTCAACCAGCGTGCTCCCACGGAAAAGTCCACCTTTGGGAGGCCACCGCCATCAACAACACCTTCCCCTTTACCAGGACAACAAACCCCGCCATTGCTGTTACGTGACAGCAATCATAACCCAGGGATGAAGAGCGTTGTTGCTGAACTAACCCTgctcaacaacaacaaccatcACAACTTCCACCACGCCAATCCCACGCTTCCGCAAGGGCGTGCAGAATCTCCTCCGCGAGATCAAGGCTGCCAGGGCAAACTCACAGGTGGTTTGTCTGTAGACACGGATGGCAGTGTGTCACCGGGAGATGGAGTGGAGAAAATGAGAAATGACTCAGAATCTGGAGATGAGCTCAGCAGCAGCTCAACTGAACACATACAGAGCGTGTCTCTAAGCGGACAGGGTCGACCTGAGTCCCCCGTTTACACCAACCTGCAGGAGCTGAAGATCTGTCAGTCGTCTGTGCCCCCTGTGCCCTCCACTTCTCCTCTGCATGTGCTGGGCGACTGGGAAACACACAAAGACACGAGCGGAAGAAACTTTTACTTCAACCGCACGACGCAGGAGAGGACCTGGAAACCCCCGCGCTCACGGGACAACGGGGTCAGTCGTGGAGACACATCCAACACTGGAGACATGGAGCCCTTGTCGTCAGAGGAGAACTGTCCGAGCACACACtccagtcagtcagacagtcagtaTGGCTCTCCACCTCGAGGCTGGTCTGAGGAGCTAGATGAACACGGACACACGCTCTACGTGTCTGAATACACCAATGAAAAGTGGATCAAGCATGTAGATGAACAGGGACGGCCGTATTACTACAGCGCTGATGGGTCCCGCTCAGAATGGGAGTTACCAAAATATAATCTCTCTCCGCCAATCTCCGGAGAAGCTCCTAAGAGTCACAGTTTGGAAAGAAAGCAGCAGGAGCCCATTGTGTTGACCAAATGGAGACACAGCACATATGTGCTGGACATCAGTGACAAGGAGTCTGTAAATGCCAAACCCAACTCTCCTGAATCAGACTCCTGTCCATCCTCACCAAAACACCCCTCTACCCCCTCAGAAAAGTGTGGTGTTCTCAATGTTACCAAGATCACTGAACATGGCAAGAAAGTCAGGAAGAATTGGGCCTCCACCTGGACGGTCCTGCAGGGATCCTCTTTACTGTTTGCAAAGGGTCAGGGCAGCGGCACCAGCTGGTTCGGAGGGAACCAGTCCAAACCAGAATTCACTGTGGACCTCCGAGGAGGTTCGGTCGAGTGGGCATCCAAAGAAAAGTCCAGCAAGAAACATGTCATTGAGCTAAAGACACGAGTTGGCACAGAGCTGCTGATCCAGTCTGAGATCGACAGCGTTATTAATGACTGGTTCAGAGCACTTTCTGAGACCATCAACACACATGCTTGGGAGTCCGATGAGGCTATTGAAGAGGACATGCCTGAGTCTCCTGGAAGCGAGAAACACGACAAAGAGAAAGACCCCAGAGACTCAAAGAAGAACAGAGtAGTGAAGAACTCCAGTATGGAGTCGTCCGAGCAGAAGAAGACCAGAGTCAAGCTGAAGAAGTTCCTCACACGGAGACCAACCTTACAGGCAGTTCGAGATAAGGGTTACATCAAAGATCAGGTGTTTGGCTGCAGCTTGACTGCTCTGTGTCAGAGAGAAGGCACGTCTGTACCTAATTTTGTGAAGATGTGCATTGAGCATGTGGAGAACACAGGCTTGAACGTTGATGGCTTATACAGAGTCAGTGGAAACCTGGCTGTCATACAGAAACTGCGCTTTGCAGTCAATCACGATGAAAAGGTGAATCTGGACGACAGTAAATGGGAGGACATCCACGTCACCACAGGTGCTCTAAAGATGTTATTCCGGGAGCTTCCAGAGCCGTTGTTCACTTACGCATCCTTTAATGACTTTGTTGAAGCCATCAaaaactCAGACTACAAGCAGCGAGTCCAATCCATAAAAGACTTGATCAAACAGTTGCCAAAACCCAATCAGGAAACAATGAAAGTGTTATTCAAGCATCTAAAAAGAGTGATCGATCATGGCGAAGTGAACAGGATGACGACCCAGAGTGTGGCTATCGTGTTCGGCCCGACCCTGCTGCGGCCGGAGATCGAGACTGGAAATATGGCTGTTCATATGGTCTATCAGAACCAAATAGTAGAACTCATCCTACTGGAGTACGAGAACATATTTGGCAGGTAGAAGAACATCTGCTTATGACACAATGCCAGACGTTTAACATCTCATATCCATCGCACAAAAACTGCTGTGGACCAAGAGTGGATTTACTGTGACCTATGACTGGATTTACAGTGAACACAGGAAGGTTCTTTATGCACTTAGCATTTTGAGGATAtacatttatttccttttttctgCCATTTGGTTGTCAATTTTTGGCTTAGAATAAGCCGGATGGACTTTTGGACGATTATGGATGATCGTCAGTCTCCATTATGCACTCTTTTTTTGGGAAAATAGGAATATTTTCCTAAGTTGGacactgaaatgttttttttttcttagccaGTATTGACGACTCGGATGAAAACTGACTTCAAGAATGCTTTGCAGTGAAATGTTTCAAAGTAAAACAGATTTTTGGGATTTCATTGATTCACTCGTGTATCTGAGGCTATGACAGACTCAGaggttttgtttttcttcatttgtttttccTGTGGAATAAGCTAAAAGTGCACTGTATTAGGAAACAGTATTATATGACAATGACTACTGACTTATGGATAATGGGCTCGATTGAAATTAGTTATCAGTATTAGAGCTGGACTACGGTTTCAAAATCGAAGGATTTTCCCCTCAGTTGTTTCACCCCAGTGTCCACCAATGTTCCAACCCTCACTAATGTCAACCAGAATGGTTGTGTGTCTCTTGCTTCAGGACTTCACTTTACTGGAAAACTCACATTTTCTTCACACATCGGATCATCCGATAGGAAAACTAACGAAATGAGCCTCCCTTTACTGAAATATCAAGGCTTTCACGTGTTTGAGGTCAAATCTGTGTTGTTTCCTTGAAATAAATGGACTGTGTCGTGCTGAGTTGTGTAACAGTATGCCGAGAATCAGGTTGTTTTGCAGATGTGAACCCGATGTGTTGTGTAGTTTaaaagcaagacaaaaaaaacCTGCCAGTTGCTCTTGTATCTCTCCGGGCTTACTGGAAAAAAGAAAGGTGAGATGCTTAGATCGGCATTTAGGCCTACACGGTTTCAGATCAATACAGAATATTCATCTCCTGTTTCCTGCTCCGCCTGTGGAAGGAGAGAAGCTTGATAACAAATTGACAGGATGGTACTGGAAATAGTCCTGCAGTTGGTGTTTAACTGAAGATGCCAACGGTGGACGGCAACTTTGTCTCGTTTTTAAGCATATGTACAGATTACTTCAATATGAACTTGAATTCTGTTGTAAAAAAAAGATACCAATAATATTGAAGTGTGATGGCTTGAAGTTGTGTGTCAAAAAAAAGAAGATCTCATTTTGTTGATGTACTGATGAAGGAAATGGAGTATTGGATGGGACGAGGGAGGGGTGATGTCATCACATTGTGAATTCTGCACATTTTGAATGTAATTTTCAGACTAACTGCTGTTTCTGAAATTGATGTCTAATCCTAATTAAAAAGACAAAAGCTCATGGataatattaaagtgataatGCCTGAGTTATTAGTCTagtgtttatattttattgttcatCTGTCACCATTTATCCTGATAGTGCAGGAACTGATGTTACCAAATGACGCAGGGAACTATCAACCATTTCCTTCCTTTTAATACaatgatctaaaataaaagtatatcCTGGTGATTTGAATACAGCCAAATGTTTAGtgcttttctgtatttttaaaccTTTTCTTCAGTAGTTTCAGCAAACAAATAGAGATGTACTCAAGTATTAGCCAAC

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1727 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in retina and somite. Orthologous to human ARHGAP12 (Rho GTPase activating protein 12).

Ensembl:

ensembl_id ENSDART00000158440

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010942 lncRNA upstream 28608 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA upstream 28608 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010940 lncRNA upstream 129933 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1117526 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1148700 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010944 lncRNA downstream 11383 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009402 lncRNA downstream 168273 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009425 lncRNA downstream 487712 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 505696 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1650982 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009395 mRNA upstream 9935 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009394 mRNA upstream 74658 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009393 mRNA upstream 96207 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009392 mRNA upstream 127055 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009390 mRNA upstream 134543 26467847 ~ 26487363 (+) False XLOC_004743
TCONS_00009401 mRNA downstream 151333 26877381 ~ 26964998 (+) True XLOC_004753
TCONS_00009404 mRNA downstream 295931 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009403 mRNA downstream 295931 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009405 mRNA downstream 296469 27022517 ~ 27027017 (+) False XLOC_004755
TCONS_00009406 mRNA downstream 298628 27024676 ~ 27026373 (+) True XLOC_004755
TCONS_00009383 other upstream 973663 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1144000 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1370119 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2056314 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2203566 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 408821 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 430895 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 492945 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 505247 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2219484 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

//