RNA id: TCONS_00009403


Basic Information

Item Value
RNA id TCONS_00009403
length 5135
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_004755
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27021979 ~ 27028808 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caacattttgagaaaaaagaaccagccTTTTCActaggctggctatgggcctatCTCTATTGCATTTATGGCAAACAAAAGTCAATAAACAACATGTGTAAACAAAATTATTCTACATGATATTACACTGAATGTATTTTTTCCAACTCTCATCCACTTATGGCAAATACAAAGGTTTAAAAAACGTAGAAAACCAAATCGCTACAAAATAAGCACTTGGCAAAGCACTGTTATTAAACATTGGTAAATAAAGTTAGAAATGAAGGAGTGCCAAAACGTCAGAGGAAATGACGTTGGCGAGGTTTTCTCCCCAAGTGTGTACGGTATGGTCCGTATTTTGCCTCCGCCAGACAAATACGTTCCCATATACTTACTTTCCCGAACATATATTCACTATCTTGACCAGATTCAATACGCAAAGAAAACCGTACACGATACGAATGTTTATAAACGTGTGTATGCTTATTTTACCTTTAATATTGCTCGCAAACCCCATCACTTTGAATGTAAACACGTCCTGACAAAACGCATGCGCACTGAGACAAACGCACTCGTATATTGGGACATTGTGCAGATTCGAGCCTGAAAATGGGGGACAAACAGCAATAAAATCTGCAGACAAGCCTCTATTGGAGCCATGGTTCATCGTGTAGAGGTTTTCCTTCGCCATGAATATGCGACCCGAATGCTTTTCTAAAGCAGGATTGTACTCAAAGAAGTGTGACTTCAGCCCATCTCAAACAAGACATCCAGTTAGTGCCCAAAGAGAGCTCAGAGATCCTCTATGTGACACACCAGACGACACTAGAGAACATCTGATCTCGCAAAAGAACTTAGAACGGGCTTCATTGCCTTCAAAGCCTGGCAGAGAGTTGATCGTGGCTTCAGAGGCTGGCTCTGTGGGCACAGAAACACTGTCATCTCAAGCTAAACAAATGGGGGGTGAAGGCACCCCTGTAAAAAGTAAAACTCCTTTTGGACAGACCAACGCCATTGATAACAAGCCAGAGTTTGTATCCATGAATTCTCATATTAATTCTAGAGACCCTGTTGGTGAGAAAAATGCTAAAGAGACTATGGGGTCATCTCACGAACACTCCGAGGGTAAAAGGACCAATATGAAGAAGATCAGTGGCAATCCTCATGCACAAGCCACTTGCCTTAAACAACTGCTGTTGCTTCAACTGGACTTGATCGAGCAACAACAGCAACAGCTGCAGTCTAAGGACAAGGAAATAGATGAACTCAAATCAGACAGAGACACGCTGCTTGCCCGCATTGAGCGAATGGAACGTCGTTTGCAGTTGTTAAGCAAGGAACCACGTGACAAGAGGCTCTTCCAGCCTTTAGAGAGATGGGTTCCAGACACCGATGACTTTTGGGAATCAGATTTAGGCGACAGCCCACAAACTCAGGCATCCAAGTCAAGTGGCAAAGTGCAAAAGCGAAAATTAAGCGCAACCGAAACAAAGACGCAAAGGTCAAGAGGCAAGTCCTCAAGGACAACTCCCCAAAAATCAGACACAAGAGGGCCATCGCCATGTCAGCGTGAGCTGCGGAGCAAGGAGACCCCAGAGAAGGCAAGCACTGGGAAATCGTCCAGAAAGACAGACCAGCATGCAGAGGAAGGAAGCAGCAAAGAAGCAGATGAACTTCCTTACATGACAACCACTGAAATGTACTTATGCTGCTGGGAGCCTCCAGATTCATCATTACAGGAAGATTGTCCTAAGAAAGAAGAGGATGTTGCAATACCATCGTGGAGGGAAAACATTATGGAACCCCTAAAGGAGGAGGATGCAGCTGATCTCCCTGAAagtcTTGATGACAGCGTTTTCCTGAAAAGACATGCCAAGTTAGAGCTTGATGAGAAGAGGCGAAAAAGATGGGACATTCAGAGAATTCGTGAACAGCGTATGCTTCAAAGACTGCAGCAGCGCATGGAGAAGAAGAAACCGAATGTTGTTCAGGAGAGCGAGCCAGAGGTGTCCTCGTTTCATCCCGATTTGGAAAATGtgGAAGCCATCATGGTGACACCCTTTCTGCCCGTAGTGGCATTTGGACGGCCTTTGCCCAATTTGACACCACATCCTCTTTTATCTTCTGTCAGGAACTTTGAGTTGCCCTGGCTCGATGAAAAAAGTAAAGGTCGTGTCGAAAGCCAGAagaaacaaactccacacaggaccTGTCGGAAATGAGTCGCAGAGATTCTGGCCACATGTCTGGCTTGAGAACCACATCCTGGAGCGATACTTCACAACATCACATTAAAGCAGAATTTGATCAGTCGTGTGATGGCATCTGCACTCAATCCGCTCACTCAAAGACTGTTTATTCGAGAAGGAAAAGGCAGCAATACAGCTTTGTTTCCTGATAATAAAGCACCAGCTGCCCGGAGTACTGCTATTTTAGTTCCTCACATTCAGTGTGTGGCCTTGTTTTGAACCTTTACTTTACTTGTAGTCCTCTTCTGGGTACTTCGACTAAGGTGAAGTGATATCGGTTATTGCAGGCTTCACTGCAAACACTGTTTTAATGTCCACTAAACTGGTTATGGAGTATTGCTGCACATTTGCATGTAATGCCTCAGTAGATTTGTGTTGAGAATGacgtttgcttttgaaaatgtaattgtgcATGAATGTCATGAATATCCTATGcctaaaaatgtacatatttttgtAAGCATAGTGTAGTTATTTAGATAGGAAAGATATTGGCAGGATTAGAAGAGTTTCCTGATGTAAACAAGTTGCAAGAATTATTTGTATGGCTGTTCACGTGTCAACAAATCGGTTCAGCATCCCATGCTGGTTTAAGGACGCTGCCCTAATGTTATTTTTGGATTCAGAAGTTGGTTTGCTGATGATGTTTTTGATGTACCTCAAAAATCTTGattgaaaatacatttattttacgcTTCTGTTTGCTTTAAACCTCATCCATGTCCAAAAGTGTTGTTGTGTCTTTATTAATTTAGCATACATTCTGTGCCTCATGGGAGTCATTTCAGAGCATTTGTTGTGGTCCCTAAAGATTTCTTCCTAAACATCTTGTTCTATCTAACAGTGAAAATCtgattctgtatgtgtgtgtgtataaatgctAATTCTCATCAGCACACATATCAATAGTTTTGGTTTCTTGTGAATGTGTACAACTGGATCTCTGTACATAGCTTTACTCACATCCATTGGCTGTAAATAAGGAAAATGttgctgttatttttttatttaatgtcagaAATGTTGTATGTTCAGCATAGATATTAAAATGATAggattatttacaaaataagaacttttgtttttcaaaaaaataaaaacaacacgcTACAGTGATTCAACAAttgatgcttgttttttttttaaagttatatacTTGAAGTGGATCAAAGCCTTTTATTTATTACAGCTAttcttgttaatttatttattttttatttcccaaatcaCTGGATTTGAAATAGATGGCAAAATTATGAGAACAGCACATTCAATCTAATAATCTTATGTTATTATGTCTAAGTCcatcacatttattaatattcaaGTTGCATGATGAGATCCACAAAACTTGAGACACATGtaacattatatcattatgaaatAAGTGAACAAATAACAGAATAAAATTATTCCCTTCATAGAAAgtgaaaaaatgtttattgagacaaaaaaatatgcaaaaccagaaataatttgtcaaaatataCCACCTCTTTTAATTCACCATGAGATAAATACACTAGttatatttcttttgatttttacaAACAAGTCTAGATTATTTTACGATAAAACAAGCTTTGGAAAACTGCCGCcaaattattatcttttttttccaaACGAAATGATCAAAGTTAAAGAGATTTTGCCTTGTTCATAAACCTTTAAGTTTATGAAGGTTTATAGTTTAATGAACAAGCCTAAGTGTAGGCACTATAGATTCAATCAATCTGGTAAACAAATATATGAACCACCACATTTATTAGATGAAGGTATTTACTACTAAAAGATCACAATGAAAATATTATGATAGTATAATAGCGTGGGTATTTCAGCAGTTCTCTGCTATACTTTTATATAAACAGATTGAAAAGTGGAGTGACTTTTTGCATCACATATATAAAAAGATCTGTGCCTATTAGAATAAGGGATGAGCAGTTTTTATATCACTGAAATATTTAGTGTTAAAGTGTCTGCTAAAGATCAACTTGAAATTTTGGAGTAACAGATACTCTGTTGGCTTTATCACCTTTAAAAAGACTTGGGAGCAGTCTGATGCATTGCATCTTCATTTGGGTTACGTGTTTGATAACATTTAAACAGCACATGTCATAAAGAGAGACAGAAAACCAAAGAGACGCATTCAAGCGTCTCAtgtcagaaaaaaacaacagcattcaACCCCCCCTTCTTTGCATCATCAGTCTACATTTTAGTGAAGCGAACTCTTGACCGAAACCTGAAAGTCTTTTCCTTCTCAGTCTCTTCTGAGATTATTCAGTCTCTCTTCCAAGTCAGCATCAGCATCGGCCAGCGTAGGCTGCGGCTCAGCTTTCTTCCCAGCAGCAACCGACAGACTTCCTCCAGTAGCAGGCAGGTCTGTTCAATTGAACAGAGAAGTCAATATAATCACAAGCCAATGCATTATTTTAAAGAGCAGTAACTGCTGTAATTTTTTACACTTACTTGAAAGTTCATCAGACAGAGTCAGACCCAGCTCATCAAGAACTTGAGAAACAACAGCATCACTGCATATAAGCAAAAAGAGTGCATGTGAGGAAAGTGCAGGGTCTGTTATGTAGCAATAATATTTTAAGTCTTTTGGGGGGGAGGggcttgttttgttttacttgacCCTGCCAATATGACAACCATTCTTTTATACATGATTCATTTAGCTTTTAAAATTCAGATTCATTAAGTCAATTAGTAGACATTTTTGTCCAAAGAGATTCAACAAGATGAAACAATACACACAAGAAAGGAATTGATAGTACTAGAATTAAGAGCTACAGTAAGGAGGAGAGGTGAATTACTTTTTAATTAGAGGTTTACTGAACATTTAATACACGGGCACAAATATATaggtgaagtcaaaattattgtctgttatgtaaatatttt

Function

GO:

id name namespace
GO:0043984 histone H4-K16 acetylation biological_process
GO:0072487 MSL complex cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4491 Predicted to enable chromatin binding activity. Predicted to be involved in histone H4-K16 acetylation. Predicted to be part of MSL complex. Orthologous to human MSL1 (MSL complex subunit 1).

Ensembl:

ensembl_id ENSDART00000183881

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009402 lncRNA upstream 125363 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010944 lncRNA upstream 187787 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00010943 lncRNA upstream 296198 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA upstream 329928 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010941 lncRNA upstream 428681 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009425 lncRNA downstream 184952 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 202936 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1348222 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00010744 lncRNA downstream 1588893 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009458 lncRNA downstream 1904716 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00009401 mRNA upstream 56981 26877381 ~ 26964998 (+) True XLOC_004753
TCONS_00009398 mRNA upstream 295931 26632448 ~ 26726048 (+) False XLOC_004750
TCONS_00009397 mRNA upstream 296198 26622010 ~ 26725781 (+) False XLOC_004750
TCONS_00009407 mRNA downstream 5786 27034594 ~ 27060129 (+) False XLOC_004756
TCONS_00009408 mRNA downstream 5952 27034760 ~ 27060806 (+) False XLOC_004756
TCONS_00009409 mRNA downstream 5952 27034760 ~ 27061336 (+) False XLOC_004756
TCONS_00009410 mRNA downstream 27092 27055900 ~ 27058992 (+) True XLOC_004756
TCONS_00009411 mRNA downstream 32912 27061720 ~ 27092286 (+) False XLOC_004757
TCONS_00009383 other upstream 1373736 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1544073 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1770192 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2456387 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2603639 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 106061 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 128135 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 190185 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 202487 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 1916724 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

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