XLOC_004753 (znf438)


Basic Information

Item Value
gene id XLOC_004753
gene name znf438
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26877381 ~ 26964998 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009401
ATTAATGAGGCGCATGCTGCAAATTAACCAAGGGTCCTCTGATCGAGCCGGAGGATATTTCTGGAAGGTGAGCAGAGGACTGTGGAAGGAGAAGAAGAGAAAGAAGAGGATTGTTAGCCGTCTTGGGACAGGGACACTGAAGATTTTTGGGgatcTTCAGTGACACTGTGGCAGACATGAAAACCCAAGAGCACCGTTCCAGCCCTCTGAAATCACACATACAGAGTGATGCACGAACCCACTCCCAAATGAAGGGTCTCCAGTTTCGCAGCATTGCCCCCAAAGCCCCAGCAGTGGTTCCATCATCTGCTGTTTTGTCCTGCCAACCACCCTCAGCCCTTCCAGAAGCATCCACGGCTGTCAGCCCCAAATCCATCTTGGTCCCTGCCCAGAACTATGCACTCATGCAGGTGGCTGGACAAGAGGGGACCTTCTCATTGGTGGCCTTACCTCAGACACAACAGCAACAGCCAATCCAGAAGAACCTTAAGCTGCCTATTCCTAGGTACCAACCAGTGAGAAGCAAAAGCGCTCCAGAAAAAGGCGGTAACAAGATTCAGAGTCCAACAAAGGTTTCTGCAACCACACACGCTCAATCATctattttaaaaacagaacaGAGTTCAGAGCCACTGTCTGAGCAGCTAGTTTTGCCTGACACTCCTGCTTCATCTGATATTAGCATTGCACCCCTGCTGCCAGCTTCACATGTGGATCAAAAAGTGGAACAAAAGAGCGATGTCGGCCCACTCAGAAACCAGCCTTACCCTTCAGGAACCTCCCTTGTTGCTTCCATCAAGAAAATCTCACCAGTTAAAACACAAATAGAGTGTCCAGCCTCTGCTGGCAGTGCCATCACAGTCCTCTCTCCCACTATCTTTAGCAAAGCTGTTCAGATCATTCCATCTCCACCCAAGGGCAAGCTGCCCATCCTACCCTATGCCAAGGTGAAGAACTCCCTTCTGGCACCAACCAGCCTTGCCAGCACCCCATTTTCAGACAAGCAGACTGTAAGTTGGGCCAAAAGCAGCCCGAAAAACCCTACTGAAAACAAAGTCAAGTTCATAAATAACAAAGTTAAAACCGAAAGCCTTAGCCAAGATCTCAATAACACCCAGTTTAAGAAACCTTCAGGCAAAAAACCAGGGAGGAAGAGAAAGACCATGGAGGACATTTTAGCCTTCGAGGCCAGAAAGAAAAGATCCTTGTCGTTTTTCAGGAGGAGGGTACCTGAGAAACCTCCACCTGGTGTGCAGAATTCTGCCTCTCAGCAGAAGTTCCTGGACATATCTAAAAAGTATCGAAGTATTCGTCCCAAGCCTGTTCTAGTAATGGAAGCAACTATTCCACAACTTGTACCCCTTCCATCAATGTCCGCATCAGATAACCCTGATCAGGATCTCTTAGCAGGACAGCAGATATCAGGGAAAACATTGAGCGAACCACAGTCTTCACAAGCTACTGATCGGCAGCCTGTGCTTAATTGTAAAGTTAACAGTGGAGTCATTTACACATCAAGTCGTCTGCTGCACCGATGTCCTACCTGCAACAGGTGTTTCCAGTTCAAACATCACTTGCAGAGCCACATGAACAGCCACAGTAACCTCCGGCCCTATGTCTGCCCAGTGTGCAGGAAGGCCTACGCTCACTCAGGCAGTCTCAGCACTCATATGAAACTCCACCATGCGGAAAGCAAACCCCGGAAGAGCCTTTGCTGTGAATTCTGTGAGAAATCTTTTGGCTATGTTGGTGTCTACTTCAGCCATTTGAGAGAGGTGCACCGGGTAATACTTACCGTTGAGCCGTCCATCAGTCAACATGAAGAAAGCATTTCAGTTGAAGaGTCTTCGGAAGTTGATGAACAGGCCTCAGAACAGCGCGTTGACCCAGTGGAGCTACAAATTAAGTGTGGGCGCTGCCAGGCCATCACACCTACCTTTGCTGACATGAAGCTGCATTTATTGTACGTCCACGGGGAGGAGGTCCAGGTGCGACTAAGGGACGGGGCCATGCACGGGGGCCGGGAAGCTGAGGATGAACTGGTCAAGCATGCAGCGCATTACTGGAGGCAGCTCAATGAGAAACGCAATCTTGTTCACTGCGGCACCTGCAACGAGGAGTTCTTTTCCTTTTCCAAGTTTAAACACCACCTCCATTCTAACCATCAAGAGAGTccagaagaggaggaggaggaggaggagaaagaagAAAAGATGGTGATAGGTAAGGGTCTAAGTAAAGATATATCCCTGAGGGTGGGATCTCACTTTAACTGCATCCTTTGCAGTAAGGTGTTTAATAAGAAACAAGAGGTTATTGAGCATTGGAGCGCACAGCACAACTGTGAAAATCCCACCCTACTTTGGGATGTTCTGGACTTTAAAGGGGAGAACTTGCCTACTGATGGGCCAAATTAACTGTAATTTGGGTAATTTATTATTTGCTCCACTTGTCGACTTTGTGTTTTGTGCAGGATGCGGTGacattaatgcaaaaaaaaaatatcactactagatttatttttaagttgttgATCTTTTGTAATGCTTGGATTTAAtggtgtttatttgttttgtgtttttgttttttctctttaaCATTTGGATGTGATATGCATTACAACTTTATATATTCATAAAATATTCATCTTAAACCTCAAATTCAGTCCATAGCACAGGTGCAGATGTAATATAACTGCCCGTAAGGATGATAATCATATTATTTTGTGGAGATGTAGTGTGTTAGTGACTGCTTCAGATGAGTGAATCAGGTGAAACAGACTAACAAACGCTCATCAAAAACACATTGCCACTCGGCCAAATTGACAATTTGCAATTGACTGAATACAAACGGGGCATGATTAGCATGCTTGAAATAACATGTCAGAGAACTTTCTAAGTAACACCAATAATCAATGACGTTCCACGAATACATATAGATAAACACAtagtttgaaaaataaataattcctcTGCTGAGAGTCACTTTTCAGCAGGGGAGGTCCAAAAATAAGGACTTAAAATATCCCTTAAAAAAGAACTCCATTTGGTCAAGCTTTATCTGTTAGATTCAGTATGAACGTGTGTGTATGGTTGTGTCATAAatattgtgtgttgtgtttttggatggaaatgctatatatttaaactatttttccATGGTGAAA

Function

symbol description
znf438 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF438 (zinc finger protein 438).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-868 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF438 (zinc finger protein 438).

Ensembl:

ensembl_id ENSDARG00000061311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009401 True 3166 mRNA 0.45 5 26877381 26964998

Neighbor

gene id symbol gene type direction distance location
XLOC_004752 NA coding upstream 43189 26737431 ~ 26834192 (+)
XLOC_004750 arhgap12b coding upstream 151333 26621906 ~ 26726048 (+)
XLOC_004751 NA coding upstream 185330 26691819 ~ 26692051 (+)
XLOC_004749 si:dkey-148d16.5 coding upstream 265410 26608883 ~ 26611971 (+)
XLOC_004748 NA coding upstream 284083 26589644 ~ 26593298 (+)
XLOC_004755 msl1b coding downstream 56981 27021979 ~ 27028808 (+)
XLOC_004756 fbrs coding downstream 69596 27034594 ~ 27061336 (+)
XLOC_004757 srcap coding downstream 96722 27061720 ~ 27092286 (+)
XLOC_004758 ttll6 coding downstream 131837 27096835 ~ 27115412 (+)
XLOC_004759 hoxb8b coding downstream 152611 27117609 ~ 27120171 (+)
XLOC_004744 NA non-coding upstream 385408 26489353 ~ 26491973 (+)
XLOC_004738 CR932018.1 non-coding upstream 1229138 25648127 ~ 25648243 (+)
XLOC_004762 dre-mir-10a non-coding downstream 169871 27134869 ~ 27134967 (+)
XLOC_004777 NA non-coding downstream 1412032 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1652703 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1968526 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 2048575 29013573 ~ 29013690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06222033_06227075 ZNF438 coding CI01000063 null 6222033 ~ 6227665 (+)