RNA id: TCONS_00010943


Basic Information

Item Value
RNA id TCONS_00010943
length 5037
lncRNA type sense_over
GC content 0.45
exon number 16
gene id XLOC_004750
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26621906 ~ 26726048 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGAATAAGACAAGGACTGTTTGAGCCATGAGTGAACGGGATGGCCGCTGTGATTTGTCCATCGCCCCGGGACAGGTGTATATTGAAGTGGAGTACGATTACGAGTACAAAGCGAAAGACAAACTCATTTCCATACGGCAAGGCGAGTGCTACATGTTAGTTCGGAAAACCAATGAGGACTGGTGGCAAGTTCGTCGGGAGGAGGGCACCAAGGCTTTTTACGTCCCTGCTCAGTATGTCCGAGAGGTCCGACGTGCCCTTATGCCACCTCCCAAACCTCGAGCAAAACCCCCAAATGTTCTCGAGATCACCCATTGCAGATCTTCGAATGAAAATCTCAACCAGCGTGCTCCCACGGAAAAGTCCACCTTTGGGAGGCCACCGCCATCAACAACACCTTCCCCTTTACCAGGACAACAAACCCCGCCATTGCTGTTACGTGACAGCAATCATAACCCAGGGATGAAGAGCGTTGTTGCTGAACTAACCCTgctcaacaacaacaaccatcACAACTTCCACCACGCCAATCCCACGCTTCCGCAAGGGCGTGCAGAATCTCCTCCGCGAGATCAAGGCTGCCAGGGCAAACTCACAGGTGGTTTGTCTGTAGACACGGATGGCAGTGTGTCACCGGGAGATGGAGTGGAGAAAATGAGAAATGACTCAGAATCTGGAGATGAGCTCAGCAGCAGCTCAACTGAACACATACAGAGCGTGTCTCTAAGCGGACAGGGTCGACCTGAGTCCCCCGTTTACACCAACCTGCAGGAGCTGAAGATCTGTCAGTCGTCTGTGCCCCCTGTGCCCTCCACTTCTCCTCTGCATGTGCTGGGCGACTGGGAAACACACAAAGACACGAGCGGAAGAAACTTTTACTTCAACCGCACGACGCAGGAGAGGACCTGGAAACCCCCGCGCTCACGGGACAACGGGGTCAGTCGTGGAGACACATCCAACACTGGAGACATGGAGCCCTTGTCGTCAGAGGAGAACTGTCCGAGCACACACtccagtcagtcagacagtcagtaTGGCTCTCCACCTCGAGGCTGGTCTGAGGAGCTAGATGAACACGGACACACGCTCTACGTGTCTGAATACACCAATGAAAAGTGGATCAAGCATGTAGATGAACAGGGACGGCCGTATTACTACAGCGCTGATGGGTCCCGCTCAGAATGGGAGTTACCAAAATATAATCTCTCTCCGCCAATCTCCGGAGAAGCTCCTAAGAGTCACAGTTTGGAAAGAAAGCAGCAGGAGCCCATTGTGTTGACCAAATGGAGACACAGCACATATGTGCTGGACATCAGTGACAAGCCCTCAGAAAAGTGTGGTGTTCTCAATGTTACCAAGATCACTGAACATGGCAAGAAAGTCAGGAAGAATTGGGCCTCCACCTGGACGGTCCTGCAGGGATCCTCTTTACTGTTTGCAAAGGGTCAGGGCAGCGGCACCAGCTGGTTCGGAGGGAACCAGTCCAAACCAGAATTCACTGTGGACCTCCGAGGAGGTTCGGTCGAGTGGGCATCCAAAGAAAAGTCCAGCAAGAAACATGTCATTGAGttgctgcagatttgttggctgcacatccatcatttgaatctcccgttccatcacatcccaaaggtgctcaattggattaagatctgctgtgaaggccatttgagtacagtgaactcactgtcatgtacaagaaaccagtctgaggtaATTCGCACTTGACATGGcttgttattctgctggaagtagccatcagaagatgagtacactgtggtcataaagggatagacatggtcagcaacaatactcaggttgacTGTGGTGAGATGGTGCTCAATGTggactaatgggtccaaagtgtacctagaaaatatcccccacaccattacaccaccaccagcagcctgaaccaatAATTCGAGGTGGGatggatcaatgctttcatgttgttaatgccaaattcagACACTTccatgtcgcagcagaaatcgagacacaTCAGACCAGCCAATGTTTTTCCAATGTTctgttgttcaattttggtgagcctgtgcaaattatagcctctgtttcctgttctgagctgacaggagtgacacccggtgtggtcttctgcagtTGTAGCCCATCTGGCTCAAGGTTTGATgaattgtgcattcagagatgctcttctgcatacatcGGTTCTATCAGCTTGTACCAGTCTGGCTTTTCTCCTCTGACGTCTGACATAAAcgaggcatttgtgcccacagaactgctgctcactggatacttGCTCTatttttcaggccattctctgtaaactctagagatggttgtgtgtgaagatcccagtagatcagcagttctaaaatactcagaccagcccatcttgcaccaacaaccataccatgttttaagtcacttaaatcatctttcttccccctTCTGATGtgatttaaactgcagcagattgtcttgaccatatttacatgcctaaatgcattgggttgcttattgactgattagaaatttccattatcaacaagcagttggacagatgtacctaataaaggggccggttagtgtatattttaatgttttattgtaaCTGAATCTGTCTGGACACCAAATCTGCTTCCACTGACCTGATTTGAACTTTGACCCTGGCAGCTAAAGACACGAGTTGGCACAGAGCTGCTGATCCAGTCTGAGATCGACAGCGTTATTAATGACTGGTTCAGAGCACTTTCTGAGACCATCAACACACATGCTTGGGAGTCCGATGAGGCTATTGAAGAGGACATGCCTGAGTCTCCTGGAAGCGAGAAACACGACAAAGAGAAAGACCCCAGAGACTCAAAGAAGAACAGAGTGAAGAACTCCAGTATGGAGTCGTCCGAGCAGAAGAAGACCAGAGTCAAGCTGAAGAAGTTCCTCACACGGAGACCAACCTTACAGGCAGTTCGAGATAAGGGTTACATCAAAGATCAGGTGTTTGGCTGCAGCTTGACTGCTCTGTGTCAGAGAGAAGGCACGTCTGTACCTAATTTTGTGAAGATGTGCATTGAGCATGTGGAGAACACAGGCTTGAACGTTGATGGCTTATACAGAGTCAGTGGAAACCTGGCTGTCATACAGAAACTGCGCTTTGCAGTCAATCACGATGAAAAGGTGAATCTGGACGACAGTAAATGGGAGGACATCCACGTCACCACAGGTGCTCTAAAGATGTTATTCCGGGAGCTTCCAGAGCCGTTGTTCACTTACGCATCCTTTAATGACTTTGTTGAAGCCATCAaaaactCAGACTACAAGCAGCGAGTCCAATCCATAAAAGACTTGATCAAACAGTTGCCAAAACCCAATCAGGAAACAATGAAAGTGTTATTCAAGCATCTAAAAAGAGTGATCGATCATGGCGAAGTGAACAGGATGACGACCCAGAGTGTGGCTATCGTGTTCGGCCCGACCCTGCTGCGGCCGGAGATCGAGACTGGAAATATGGCTGTTCATATGGTCTATCAGAACCAAATAGTAGAACTCATCCTACTGGAGTACGAGAACATATTTGGCAGGTAGAAGAACATCTGCTTATGACACAATGCCAGACGTTTAACATCTCATATCCATCGCACAAAAACTGCTGTGGACCAAGAGTGGATTTACTGTGACCTATGACTGGATTTACAGTGAACACAGGAAGGTTCTTTATGCACTTAGCATTTTGAGGATAtacatttatttccttttttctgCCATTTGGTTGTCAATTTTTGGCTTAGAATAAGCCGGATGGACTTTTGGACGATTATGGATGATCGTCAGTCTCCATTATGCACTCTTTTTTTGGGAAAATAGGAATATTTTCCTAAGTTGGacactgaaatgttttttttttcttagccaGTATTGACGACTCGGATGAAAACTGACTTCAAGAATGCTTTGCAGTGAAATGTTTCAAAGTAAAACAGATTTTTGGGATTTCATTGATTCACTCGTGTATCTGAGGCTATGACAGACTCAGaggttttgtttttcttcatttgtttttccTGTGGAATAAGCTAAAAGTGCACTGTATTAGGAAACAGTATTATATGACAATGACTACTGACTTATGGATAATGGGCTCGATTGAAATTAGTTATCAGTATTAGAGCTGGACTACGGTTTCAAAATCGAAGGATTTTCCCCTCAGTTGTTTCACCCCAGTGTCCACCAATGTTCCAACCCTCACTAATGTCAACCAGAATGGTTGTGTGTCTCTTGCTTCAGGACTTCACTTTACTGGAAAACTCACATTTTCTTCACACATCGGATCATCCGATAGGAAAACTAACGAAATGAGCCTCCCTTTACTGAAATATCAAGGCTTTCACGTGTTTGAGGTCAAATCTGTGTTGTTTCCTTGAAATAAATGGACTGTGTCGTGCTGAGTTGTGTAACAGTATGCCGAGAATCAGGTTGTTTTGCAGATGTGAACCCGATGTGTTGTGTAGTTTaaaagcaagacaaaaaaaacCTGCCAGTTGCTCTTGTATCTCTCCGGGCTTACTGGAAAAAAGAAAGGTGAGATGCTTAGATCGGCATTTAGGCCTACACGGTTTCAGATCAATACAGAATATTCATCTCCTGTTTCCTGCTCCGCCTGTGGAAGGAGAGAAGCTTGATAACAAATTGACAGGATGGTACTGGAAATAGTCCTGCAGTTGGTGTTTAACTGAAGATGCCAACGGTGGACGGCAACTTTGTCTCGTTTTTAAGCATATGTACAGATTACTTCAATATGAACTTGAATTCTGTTGTAAAAAAAAGATACCAATAATATTGAAGTGTGATGGCTTGAAGTTGTGTGTCAAAAAAAAGAAGATCTCATTTTGTTGATGTACTGATGAAGGAAATGGAGTATTGGATGGGACGAGGGAGGGGTGATGTCATCACATTGTGAATTCTGCACATTTTGAATGTAATTTTCAGACTAACTGCTGTTTCTGAAATTGATGTCTAATCCTAATTAAAAAGACAAAAGCTCATGGataata

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010942 lncRNA upstream 44829 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA upstream 44829 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010940 lncRNA upstream 146154 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1133747 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1164921 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010944 lncRNA downstream 11650 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009402 lncRNA downstream 168540 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009425 lncRNA downstream 487979 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 505963 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1651249 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009395 mRNA upstream 26156 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009394 mRNA upstream 90879 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009393 mRNA upstream 112428 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009392 mRNA upstream 143276 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009390 mRNA upstream 150764 26467847 ~ 26487363 (+) False XLOC_004743
TCONS_00009401 mRNA downstream 151600 26877381 ~ 26964998 (+) True XLOC_004753
TCONS_00009404 mRNA downstream 296198 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009403 mRNA downstream 296198 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009405 mRNA downstream 296736 27022517 ~ 27027017 (+) False XLOC_004755
TCONS_00009406 mRNA downstream 298895 27024676 ~ 27026373 (+) True XLOC_004755
TCONS_00009383 other upstream 989884 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1160221 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1386340 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2072535 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2219787 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 409088 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 431162 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 493212 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 505514 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2219751 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

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