RNA id: TCONS_00009394


Basic Information

Item Value
RNA id TCONS_00009394
length 2913
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_004747
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26538861 ~ 26547248 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCTTGACCCTCATTGGTCACTGTAGAGTCTATGGCGGGTACACGAAACAGTTAGTTACAGTCACAAACATGCGGCTAAATCTGATAGCTATTAGTCTACGAGCAGAAGCGTCTTTTAAGTTTCAATAAACTCTGAAAAGAATGTACAACAGGCACAATAATGGCCGCGGCTCGGTGCAGTGTTGAGTTTTTATCAGAGTTCAGTGACTGTCAGTCAGACTCAGTTCGCTTCATTCGGGAGGACACGAATCTTTTCTTGACCAGCGGACACCGAGATGTGCTTATATTCAGTGTGCAGGACAGAAAAGTCAAGACCGTGATTCAATTTGAAGACTCGGTGACTTTTCTGGATTTAAGTGATGATAAACATCGACTTTATGCACTCTGCAAGAACGGTGGGCTTTACTGTATCCCTCTACCACAACAGCTCAGTTCTTCCCCTGTGAACAAAAGTCCTGAGCCTATGCTACATGTTGTATCAGATGATTCACTTGTCCTCAAAAATGCAGGTCTGCAGGCATTCACCATAGTCAAAAAGATCCTTGTGACTCTTAGTCTTGACAAGTCTGTCTGGAGTTTTAATCTCTATGAAGAGCCTGGATCCAAACCCTTTTGTAAACTTGCACATATCCAGATCACAACTGTAACGACTTGTTGTTTAAACGTAGCAGACAAAGAAACAAGTGTGAGCTCACCTCCAGTGCTGACCTGCATCCATCCTGAGGGCTCTACGTCAGTCAAAACTCATCAATCTGACTTGCATCCTCATCTTGAGCCCCATCTCTTCAGGCTTTTATTTGGAGTGGACGCCGCTTTAGTCAGTTCCCCGGTTATTCTGTGTGGTTTACCTGATGGACGTATTTGCTGCTTTCCTTTGCTTGTCCCGACTCTGACTGGTCCAAGAGGAGAGCAGAGATCTCCAATCAGAGTGCTTCAGAGCTTAGAGCAGCCAATCGTATTCATCGGAACTTGCATCTCTGGAGAACATGGACCTCAGAGTCTCATTGTAGTTGGTCAGAGAGGCAAACTACTAATGGTCAGAAGCAAACCAAGAAGCTCCGAAGGAAAAGAGGCAGATTATAGCTTCAATGAGCATAGTGTTCGAGGGCCAGTGCTTTGTGCCTGTGTTGATGATAAACGGCTGTTCTACAGTTCACTTAATGACTTTCACGCTCTTCAGCTCACCACATCATCTTCATCAGAAGCCATGGGAACTGAGCCCCAACTGCAAGCGCTGATATCAAACAGTCTTGGTGTATGCAGGGTTATAGCACTTGCTGGACCATATACAAACCCAACAGGGTCCGTTCAACTTTTGGCTTTATCTTCAAGTGGAAGACTGATGCGAGTCAACCTTCCTCAAGGGTCTGAAAAAGGAATCTTGTCCAGGTTGTCCTCATCACTGGCAGGCCAGAGAGTGAAAGACCTACTTGCCTCCATTGGAAACGTCTGGGAGAGGGCAGAATCCTTGAAACAGAAGCTTCAGGAGAAAAATGAGTCTCTCAAACAACTTAATCAAGTCCTAAACATTTGCAGCCTTCTGTTGGAAAGCAATGGGAAAGAAAAGCAATCTAACATGGACACCAAACCTCTGATCAGCTGTCATGGTGCAGCTAGATGGAGCTCACTGCTTCAAAAAACCTCTTTGACTCTTACATGTGTGCTTGAAAACTCAAGCGGTTGTACGCTTGAACACGGCTGGACTTTGTGCTTTCAGGTCCATTCATTTTACCAACATCCAAATACGGAGAGCGCATCTAGCTCGTACTCATTCCCACTGAGGAAACTAGATTCAGGTCAGAAACTAGATGTGACTATTCCTCTTGAAAGCAACGGTGGCCTGTTTCTGCCAGTGAAGGTCTGCTGTtccctctccttctctctctgtgCTCTGTTTGGCCCTGAAGCATCTTCCCCTGGTGTTTTCCAGCTCCTAAAAGAGGCAGGCTCCATCAGCGCAACTTTGAATACTTTAACAGTAGACTGGCTTGATGCTTTAAGACTCGAGGGATCATTTTCTCCCAATGACATCAGATGCAACACTGTCTCCGAAGGCATCCAAGCCTTTCTGCGATCCAGAGGAGTGTCTACAAAACATCTCGATAACATTTCCAACCCAGGACCTGTTGCAGTGGTGGTGAGCGTATCGATCGAGCTTCTTAAAAGCAAACTGCACCTCTCAACAACCAGCAGTCTGGAGTCGAGCATGTCTGTGCTAAACTGGTTGGTATCACCTGAGAAGATAGGATCTGTGAAAAGTCCAGTGGTTAATGCCTACAGTCCAGATGGATGCTCTGTGAAGATCATGGCCAAAGAGGTAACACTGGGAGATTTCTATTCTGAAGGACCTCTTGAAGCCCTGGAGATTCGCGTGGAAAGTTCATCAGTGGCAGCAGTGTGTGGACTCCATCACGCCATTTTGAGGCGCCTATTGGATTTGCTTAGAGACTCGTCTGCACAATATAGCCATACAAGGAATTTAAAAGCACAAAGCTTGTGTGAAGCTGTACGGCATGTTGAgtCTCTTTATAAAGATCTTCAGGATGCTCAAAATAAAGCGGCTCTTGGTGGGGAAATGAAGACAAGTCAGAGATCTGATGTCCTGTTCCACATTTTTCAGGAGCTGAGAACAAACCCACTGGTCATTCTCTAAACTACAAACACTCATGatgtatcaaataaaaagttaataCAGTAGATGTCCGTAATTTATATGGTTATACTTTTAAGACAAAGGGCCTGACTGTCTCATTGATTGTTCTATAAAAACAGACATACCAAGatgtaaacacacactctcacataaaAGCCCTCTTCACTGGACTTCGCCCTACCTCAAGTGTATAATTCATCAAAACATgaatttgtaatatttgtttaatcCACATTAAAGTCTGTGAGTGTGTTCTAAA

Function

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-130603-100 Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Orthologous to human FAAP100 (FA core complex associated protein 100).

Ensembl:

ensembl_id ENSDART00000152955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010940 lncRNA upstream 46888 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1034481 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1065655 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010939 lncRNA upstream 1130341 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010942 lncRNA downstream 42396 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 42396 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010943 lncRNA downstream 90879 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 144571 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010944 lncRNA downstream 190183 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009393 mRNA upstream 13162 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009392 mRNA upstream 44010 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009390 mRNA upstream 51498 26467847 ~ 26487363 (+) False XLOC_004743
TCONS_00009391 mRNA upstream 52379 26471712 ~ 26486482 (+) True XLOC_004743
TCONS_00009389 mRNA upstream 77117 26435918 ~ 26461744 (+) True XLOC_004742
TCONS_00009395 mRNA downstream 61635 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009396 mRNA downstream 74658 26621906 ~ 26726048 (+) False XLOC_004750
TCONS_00009397 mRNA downstream 74762 26622010 ~ 26725781 (+) False XLOC_004750
TCONS_00009398 mRNA downstream 85200 26632448 ~ 26726048 (+) False XLOC_004750
TCONS_00009399 mRNA downstream 123530 26670778 ~ 26697585 (+) False XLOC_004750
TCONS_00009383 other upstream 890618 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1060955 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1287074 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 1973269 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2120521 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 587621 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 609695 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 671745 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 684047 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2398284 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_05973598_05981144.mRNA True 2463 mRNA 0.46 7 CI01000063 5973598 ~ 5981144 (+)