RNA id: TCONS_00009459


Basic Information

Item Value
RNA id TCONS_00009459
length 115
RNA type rRNA
GC content 0.54
exon number 1
gene id XLOC_004786
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28933524 ~ 28946150 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttagcagctagctctctgcaactcgcacatggttgcccactaaagctaagcagggctgtgcctggtcagtacctggatggaagaccacatgggaaagctaggaaGCTGCCGCAA

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0050877 nervous system process biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0009581 detection of external stimulus biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0045202 synapse cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031680 G-protein beta/gamma-subunit complex cellular_component
GO:0098793 presynapse cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0031681 G-protein beta-subunit binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000191585

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010744 lncRNA upstream 327567 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00010945 lncRNA upstream 564277 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1712881 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00009425 lncRNA upstream 1715674 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009402 lncRNA upstream 2048916 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010745 lncRNA downstream 366919 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 366919 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 1207969 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00010948 lncRNA downstream 1217108 30162754 ~ 30198532 (+) False XLOC_004802
TCONS_00010949 lncRNA downstream 1255000 30200646 ~ 30211446 (+) False XLOC_004802
TCONS_00009456 mRNA upstream 12250 28910871 ~ 28933282 (+) False XLOC_004785
TCONS_00009457 mRNA upstream 12251 28910886 ~ 28933281 (+) True XLOC_004785
TCONS_00009455 mRNA upstream 12981 28910762 ~ 28932551 (+) False XLOC_004785
TCONS_00009454 mRNA upstream 44348 28888975 ~ 28901184 (+) True XLOC_004784
TCONS_00009451 mRNA upstream 79437 28854410 ~ 28866095 (+) False XLOC_004783
TCONS_00009460 mRNA downstream 10120 28955766 ~ 28960627 (+) False XLOC_004787
TCONS_00009461 mRNA downstream 10121 28955767 ~ 28960629 (+) False XLOC_004787
TCONS_00009462 mRNA downstream 10728 28956374 ~ 28960633 (+) True XLOC_004787
TCONS_00009463 mRNA downstream 16944 28962590 ~ 28963291 (+) False XLOC_004788
TCONS_00009464 mRNA downstream 16944 28962590 ~ 28963476 (+) True XLOC_004788
TCONS_00009428 other upstream 1711111 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1724943 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1782468 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 1810565 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009383 other upstream 3297289 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009467 other downstream 67927 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 486429 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 818397 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 866198 29811844 ~ 29811960 (+) True XLOC_004799
TCONS_00009481 other downstream 1014294 29959940 ~ 29960054 (+) True XLOC_004800