RNA id: TCONS_00009454


Basic Information

Item Value
RNA id TCONS_00009454
length 2373
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_004784
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28888975 ~ 28901184 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGCCAGAGAAGAGAAGTGGAGTCGACTCGACTGTGGTGTTGTTGACATTaccagaaaggctctgaaagttTTAACAGTTAACATGGCAACACAGTCTGCAGCTTCGGATACGTGTTTTCAGCCGGTCAGTTGAAGACACTGGGCTGTCAGACGAGCGCGCGCATCGGCTGATTTTGTGGAAGTGCCTAATTCAGCATGACTCGTGATATCGTTCTTGGAGATGAACTACCTGACTGGGTGGGAGCAAAAGAGTTTTATCAGAAGTATGATCCAAAAGAGGTGATCGGCAGAGGAGTGAGCAGTGTGGTGCGCAGGTGTGTACATAAACATACGGGACAAGAGTTTGCGGTGAAGATCATTGAAATCACAGCAGAGAAGATGACAGAACAGCAGCTGGAGGAGGTGAAGAGCTCCACGCTCAAGGAGATCCATGTGCTTAATTTGGTGAAAGGTCATCCGTCCATCATAACACTTATTGATTCTTATGAGTCAACGGCCTTCATATTTTTGGTATTTGACCTCATGAGAAGAGGAGAGCTGTTTGATTACTTGACAGAAAAAGTCACTCTCAGTGAAAAGGAAACCAGGAGCATGATGCGTGCTCTTCTGGAGGCTGTCCAGTATCTACATGCTCTAAATATTGTACACCGTGACCTCAAACCTGAAAATATTCTGCTAGACGACCAGGGGCACCTCAAACTTTCAGACTTTGGCTTTTCTGTCCAGCTGGGACCTGATGAAAAGCTAAGAGAGCTGTGTGGAACACCAGGATATTTGGCACCAGAGATTCTGAAGTGCTCCATGGATGAGACACATGAGGGATACGGGAAAGAGGTTGATCTCTGGGCTTGTGGCGTGATCCTGTTCACTCTTTTGGCCGGATCTCCACCGTTCTGGCATCGTAAACAGCTACTGATGCTGAGAATGATCATGGAGGGCCGGTATCAGTTCAGTTCTCCAGAGTGGGATGACCGGTCTGACACTGTCAAAGACTTGATCTCGAGGCTTTTGGTAGTGGAACCTACACTTCGCCTCACGGCAGAGCAAGCTTTAGCTCATCCTTTCTTCTGTCAGTACCAAAAGGAGGATGTGCGGCTCTTTAGTCCCAGGAAGACATTTAagGCTCTTATCTTGACTGTGCTGGCTTGTATACGGATGCAGTGCCGCTACTACCGAGCCAGACCATTAACAAAAGAGCTCCTATCAAGAGACCCTTATTCCATCCGTGGAGTGCGCAAGCTGATCGACGGCTGTGCTTTCCGCATTTATGGACACTGGGTGAAGAAAGGAGAACAGCAGAACCGAGCCGCCCTGTTCCAGAACACGGCTAAAATCATTCTCCTGGGCCTTGAAGACCTTGAAAACTAAAGGTCACATTTTTTGCTCTCTAAAGATATCACTTAACTCTCCATTTAcagtttttgtctcatttttatttccttttttctttgtttgtttttgtccaaAAGGTGCACAAACACGACCATCTATAGATGGTGGTGCTTTTTGATTTTTAGCATTGTCATGTGACCTCATTTTATTCACTATAGTTCTAGTTTTATCAGCAGATATTGCTTATTATATGGACCAGCTTCTCATCAAGAGAGCAAATTTGCTAAGATTTACTAAGCTTGTTTGCTATTCAAGCTCTTTAATTATTTTTGGCTCAAAGCAGATTGTATATGAGTTTATTATCATTCTTATGCCTCACAAACAATTCCAGACTAAACCATAGATGGACAAGGGAACATTTAACAAGGTGAAATACAAAGAATAACATACTTGAAATATACAGTTCTGTAACCCAGTTTTAAATCTTTACAAAATTTTGTGTAAATGTTTTACCACTTATATGTTGCTCTTTATCACAGCTAGCACATGATCTGTTCATCGTCAAGGTACTGTACTGATTCTTAACAGGTATacaaatatgaataatatatatataattactgtattttgtgtgtttttacttTCGAAATGAGTGTTTTCCGGAAGACTATTCTCTTACTTCTTAACTTGAATGTTGGTCTCCAGTTGACTGATGGCATTATTGAGCTGATCAGCGCTGTTTTTTAACTCTTGTTGAAGCTGAGCGCTCAGTCGCATCACTTCATTCCTCACTTCTTTTTCAACTATAGTCCTGAGGTCAGATTTGGATGAAAGCCCTTGTGGAAATAAAAACATAGTATGCACACGTGagcatatgcatttatttaatttgctgtaTGAAATGAGGATTATATGCTACTGCATGCAGTTTAGAATGAATGATATGTAATCGCTGATTTATAAATCTCTTCCACATGTATTGACAGGTTTTCtaaatgactaaaaatattaaaagttgcaaaagtatttttttacta

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005964 phosphorylase kinase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004689 phosphorylase kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-825 Predicted to enable ATP binding activity; calmodulin binding activity; and phosphorylase kinase activity. Predicted to act upstream of or within glycogen biosynthetic process and protein phosphorylation. Predicted to be part of phosphorylase kinase complex. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease IXc; and liver cirrhosis. Orthologous to human PHKG2 (phosphorylase kinase catalytic subunit gamma 2).

Ensembl:

ensembl_id ENSDART00000076362

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010744 lncRNA upstream 271010 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00010945 lncRNA upstream 507720 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1656324 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00009425 lncRNA upstream 1659117 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009402 lncRNA upstream 1992359 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009458 lncRNA downstream 32340 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA downstream 41050 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010745 lncRNA downstream 411381 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 411381 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 1252431 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00009451 mRNA upstream 22880 28854410 ~ 28866095 (+) False XLOC_004783
TCONS_00009453 mRNA upstream 26820 28856151 ~ 28862155 (+) True XLOC_004783
TCONS_00009452 mRNA upstream 33206 28854963 ~ 28855769 (+) False XLOC_004783
TCONS_00009449 mRNA upstream 51223 28825735 ~ 28837752 (+) False XLOC_004782
TCONS_00009450 mRNA upstream 53829 28825794 ~ 28835146 (+) True XLOC_004782
TCONS_00009455 mRNA downstream 9578 28910762 ~ 28932551 (+) False XLOC_004785
TCONS_00009456 mRNA downstream 9687 28910871 ~ 28933282 (+) False XLOC_004785
TCONS_00009457 mRNA downstream 9702 28910886 ~ 28933281 (+) True XLOC_004785
TCONS_00009460 mRNA downstream 54582 28955766 ~ 28960627 (+) False XLOC_004787
TCONS_00009461 mRNA downstream 54583 28955767 ~ 28960629 (+) False XLOC_004787
TCONS_00009428 other upstream 1654554 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1668386 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1725911 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 1754008 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009383 other upstream 3240732 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009459 other downstream 44348 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009467 other downstream 112389 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 530891 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 862859 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 910660 29811844 ~ 29811960 (+) True XLOC_004799

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_07420519_07423734.mRNA True 1507 mRNA 0.44 9 CI01000063 7420406 ~ 7423976 (+)
bowfin (Amia calva) AMCG00012172 True 2531 mRNA 0.52 9 CM030138.1 12217706 ~ 12223005 (+)