RNA id: TCONS_00010744


Basic Information

Item Value
RNA id TCONS_00010744
length 265
lncRNA type intronic
GC content 0.43
exon number 1
gene id XLOC_004779
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28617701 ~ 28617965 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCTGACCACATTATATATTGactattcaacccaggctcattctgaaaatgtacttctatatacatttctggagagcgccaaatatgtcctagGAGGTAAgcttatttgcagtttttgttgtcgcaaatccaccagaggctgctgtgtatgctttttgagatcttaaatttctctcgcgagtgccattcatgcctgtttttatcacataaatccaccagaggccactgttaactgactgaatgactgaccgatcgactggcCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010945 lncRNA upstream 236446 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1385050 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00009425 lncRNA upstream 1387843 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009402 lncRNA upstream 1721085 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010944 lncRNA upstream 1783509 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009458 lncRNA downstream 315559 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA downstream 324269 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010745 lncRNA downstream 694600 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 694600 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 1535650 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00009445 mRNA upstream 247217 28367557 ~ 28370484 (+) True XLOC_004776
TCONS_00009444 mRNA upstream 317772 28298859 ~ 28299929 (+) True XLOC_004775
TCONS_00009443 mRNA upstream 435981 28117365 ~ 28181720 (+) True XLOC_004774
TCONS_00009442 mRNA upstream 544139 27839277 ~ 28073562 (+) True XLOC_004773
TCONS_00009441 mRNA upstream 584522 27704015 ~ 28033179 (+) False XLOC_004773
TCONS_00009447 mRNA downstream 131224 28749189 ~ 28770817 (+) True XLOC_004780
TCONS_00009448 mRNA downstream 182023 28799988 ~ 28807184 (+) True XLOC_004781
TCONS_00009449 mRNA downstream 207770 28825735 ~ 28837752 (+) False XLOC_004782
TCONS_00009450 mRNA downstream 207829 28825794 ~ 28835146 (+) True XLOC_004782
TCONS_00009451 mRNA downstream 236445 28854410 ~ 28866095 (+) False XLOC_004783
TCONS_00009428 other upstream 1383280 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1397112 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1454637 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 1482734 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009383 other upstream 2969458 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009459 other downstream 327567 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009467 other downstream 395608 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 814110 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 1146078 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 1193879 29811844 ~ 29811960 (+) True XLOC_004799