XLOC_004774 (CABZ01027646.1)


Basic Information

Item Value
gene id XLOC_004774
gene name CABZ01027646.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28117365 ~ 28181720 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009443
GTCTCTCCCTCATCTCCCCTCCCACTCTATGCTGTGTGTagctctctctctatctctaccCCTCACAGGCACGCACTCTGTCAGTGGAGGAGAGGGTTTCGAAATCCAGCTGTAGCTCAAAGTGATCGCCTCCTTGGGCATACCCATCTAAGAGGATTCTGCCCTTATACCCTCGTGGCACTTTCTTTTGTTGTTCTGAACCTGTTGGACTCTTCTTATCCTCCACTCGGGTTTGGGATACAGTGAGTGTTCCGCTGAAGAATATCTGAAGTTTGTTTTGCATGGCTGAAGCACCTGCCTATGACTCATTTGTGCTTTTTAATATTGACATGATCTGTGAGTCCTAACACACATGACACGGCTAGAGCATTAATTTCTGGTCAACTGGAATTGCTGTACAAGGATTTTTACCAGCAAGCTAATAGGAGTAAACTCTTAGGAGAAACCATGAGTTGGACTCATTCTAAATGCTAAACGTCTGTCTGCTTGGAGCTACGCCATCAGTGGAATCCAATCAAGAGATGACCACTGTGTCTGTGGAGCCCATAGTGGCGATGGTGGAAAAGATTTCCAATGTCACTGAGAGTCCAGTAGAAAGTTCCCCAGAAGACATGGCTGCCACGTTCACCATTGGCACCATCCTGTCCCTAATGTGTCTGGTGGGTGTGTCCGGAAATATCTACACGCTGGTTGTCATGTGCCACTCCATGCGCTCAGCTGCTTCAATGTACATCTACATCATCAACCTGGCAATGGCTGATCTGCTCTACTTGCTCACAATCCCATTTGTAGTGTGTACACATTTCCTGAAAGGATGGTACTTTGGGGACATAGGATGTCGGATCCTTATCAGCATGGACTTCCTTACAATGCATGCCAGCATTTTCACACTGACTGTCATGAGCACAGAACGTTACTTCGCCGTACTCAAGCCTCTGGATACAGTCAAACGCTCAAAAAGCTACAGAAAAGCAATCGCACTGCTGGTGTGGACTGCCTCATTGATCCTCACATTACCCATGATCATCAGCGTCCAGCTCATGACAATGAACTCCAAGCAAATGTGCAACCCCACTCTGAGTCCTCTCTCTTACAAAATCTACATCTCCTTTCTCTTTGGCACAAGCATTGTAGCTCCAGGGGTGATTATCGGGTACTTGTATATACGCCTGGCAAGAACCTACTGGATCTCCCAAACTGAGACTTTCAAGCAGACTAAGAAGCTTCCAAACCAGAAGGTCCTGTATCTGATCTTTACCATTGTGCTCCTGTTCTGGGCCTGCTTCTTACCTTTTTGGATCTGGCAGCTTCTGAATCAGTTCCAGCCCACATTGGATCTCTCCACCAAGGCCAAGCGCAACATCAACTATCTAACCACATGCCTAACCTACAGCAACAGCTGCATCAACCCGTTCCTCTACACTTTGCTCACCAAGAACTACAAGGAATACCTTCGCAAGAGACAGAGGACTTGGACGGCTGGCAGCTACCTTAACCGGCGGAATCGTTTTCAGCGGTCACCTCGTCGCTCCTTGTCATCCAGCAGTCAGCAGTGCACAGAGAGCTTTGTGCTCGCACATACCTCTCGCACCAACAACAGCAGCCTCTGAGGGAAAGAAGACTGTCTGGGGCAGGACAAGAGCAAAGCGAGCCAAGATGTCTGGTATCTCCCTCAAACAGAAGAGGGAGAGCAAAGGAGGACCAGAGCAGGCAAGAGAAGAAAAGAAAGTCATGGCACACAGAAGACTCCTATGTTAAGAGGCCAATTGGAGAGGATGGAGTTGCTCGCCTCACCTGTTGTTTCATTTCAATCCTCAATGACTTTTGAAAAACCAATTCCCGGTTGATCTGTTCCCTGTGCTGTAATCACCCTGAAAGCGGGTtgatttatttgacttatttattttcatatcatCCTTCAGACTCTGTCATCAAAGATGAAATTTCAGAGCATTACCAAGAGAAAAATGTGACAACTTTCATCTCTCCCAAGTGACTTACTATGATGAGAATCATTTCCTTCAAATAACTGCAATCAGAACCTATCCGAACATGACTCCTGCGAAAGATCACATCAAAAAAGAGGCGTATTTCCTAGAACAAAATGGCTTTCTTTCATATTTATGAAAGATTCTTGCTCTGTTTGATCTTGTGAGTCGCGTTTGACAGGAAGATATtccatttgatttgtttttgattctCTGATGATCTTCATGGTAGGGTTCTAAGTGGCGATGCAGTCATATAAAGCCCTCAGGAACACTGTGGGAAGGACTTCTGAGTACACTTTTATTTTTCAGAGAGCTGTATTCCAATCCCCGGGCCTGTCAGACGGATTCTCTCTGACCAGCAAGGATTCTGTCTTCTCCATCCTATTTTTGACAAGACCGGAGGATTTACGTTGACCTCGGACTGACCCGAGAGCTGTTTCTCCAACCTACAATGCAGAGGATGCTTGGCTTTGACTTTTAATGACTTTGACATTTATACTTCCCATACTGATAAGTCAGTGCCTGTCCAGATGGAAGGTCTGTATACATATAGGACATACAATAAACGCAATGCGCACAGTGTGAGCACTGCAGAAGGAAACTCATCATCTTGGCAACTTTAACTTCCTGACTCTAAAGGAATAGATTATTTATCTTAATGCACAATGGCAAAATGGCGCTTATTGTTGTTGGACTCAGTCTtgttttacacaaaaaataaacaggaaagtACTGCCCAAATGTCGCTTTGGTATGCTGAATCTGAAAAATCTGAGAATTTTGTATAGAGAGCTGAAATATACTTGGTAACACGTTACAATAAAGTACAACTTTTTGACAATAGTTAACAAGTTGCATTAGGTATgtaactcttaaaaaaaaataaaaaatcagtagTATTTTCTATCACGTACAATGTAAGTCACTGAGTGTCACCATCAACTGTttagtaaataacatttttcaaaatatcttcaatgtATTAAGCTGATGGAACTACTCTTTTAACATTATAGTTAACTATTTTGAACTAACATTGATCAATATCTGAAAAGTTTATATATCTTAATTTTAAGAcaaaacatgtcatgttgtatcTGCAAAAATAAAATTCACTATGTGAACTAACTTGAATATTCTTAACATAATTTCTAACTTAATAATaggtaataaatgctgtaaacaagAGACTGCTCAATGTAAGTTCATTTTAGTTAAAGCATAGACTTCATTCTAAagagatgatgataataaatagaAACCATGCATActtgtgcattaactaatgttcatTGCACATTGTCagattgtaaagtgttaccaggaacttaatgtttgttttgtatttatattaaatttagatGGGCAGATTACttgttgtaaatattacagatgttatttaatttttaattttgccTTCATCTTTGTTTACACAACAGCTAAGGGCAATCAAAGATCAGGTGAAGAACACAAATATgtattatacaaaataataaagaatatatGAAGAAAGCCTTTTTGCAcctattgcacaaaaaaaaaaaaaaaaaatacatatactcaatggccactttattaggtaaagtCCAACTGCGaactgttcaactgctcgttaacaaatatccagtgagtggcagttctgtgggctcaaATGTCTTGTTTGAGGAGAGTGGGCCGACTAGTTCgagctgaaagaaaggcaacagtaacacaaataaccactcgttacaaccgagatatgcagaagagcatctctaaacgcaaAACAAGTTCAACCTTGAAGCGAAAGGGCTACAGCTGCAGAAGAGCATACTGGGCGGTCAGCAAAGAGCTGATACTCCGGTCAGCAAAGAACATGAAACTTAGGCTACAGTTCGCataggctcatcaaaattggacaataaaaaattagaaaaatgttACCTAGTCAAATGTTTCTCGATTTCTGCTACGACATTCCaatggcagggtcagaatttggcattaacaacataaaagcatggatccatcctgccttgtatcaaaagttcaggctggtggtgtaatggtctgGGGGACATTTTATTGGCACACATTCTGCCcataagtaccaattgagcattgttcAGAGTACCAGTACCAGAGTATTGTTgccgaccatgtccatccctttatggccacagtgaacccatcttctgatggctactttcagcagaataacacaccatgtcataaagcacatttccttaacatgacaatgagtttactgtactcaaacggcctccacagtcaccagatcccaatccaatagaccacctttgggatgtggtagaacaaAAGATTCGCTTTATAGATgcgcagccaacaaatctgcagcaactacatgatgctatcatttcaatatggaccaaaatctctgaggaattttccagtaccttgttgaatctatgctacaaaggattaaggcagttctgaaggcaaaactgggtccaacctgatactaataaagtagccggtgagtgtaaatatgATAAAATTAGTGTGGAAATCAGTAGAAGAAGCTTTCAATGAAGCAAAAGAATAGTTTCAAGGCTAAATTGTGTACCTCAAGAGAAAATGACTTGTTTCCAAATGACTAAAACAGCCATTTTTTTATCGACTTGCTTTGTAGCAAggtaatttttttctttcataagaTTAATAATGGATGTGCTTTTGGAAATTTTTGCGCAAATACAAACAACTAGAGacaatttaaatgaagtgcaGGAATTCAAAAGCAATGCTTTCTTGAAGCTGTTTGATTGAGGCCTACACAGATATTTCCACATTTTCTCTCTGTGTCTTTGTTTTAATCGTGCTGTAGTGATGAcattttttcatatttgtcaTTTCTTAGTCTATGTGCAATTGCAACAATtctcactgtatttaaaagactCAATGATGCTTGCTGAGCAATGTACCTTATATGCACTTAATAAACATGTTCAGTAAACAGTGGCACTACTTCTAACTTTACCTaatgtttttttcataattattactcatatatttttaaatgatttttaatgaAGGCAATACTTCTGGACAGGTAGTTTGCTGTCATTTGCTTTTTACATACAAAAGATACCCCATGCCTTAAAATTGCAAACCTGAATTAAAagcttttgttttgtaaatatttttgcgCAGTGCACTGCCATTCAGATTTCACAGGAGACTTAATGAGCCAGATGTTTCAGCAGATGTTGTCATGAGAGGTTTAGAGGTTTGTTCAGTCTGGCCAGCTCAATGGAAATACTGCTGTGTTATCCAATGGTGTGATTTACTGTAACATTAGCAGTCCTTTCATTACTATTATGTCAATCTGTGAGTTTCACAACAAGGTCTCATTTTGCactaatgttttaaattaaaatcgtGTATGGCTAAACACAATGCAGAACAAAAACAGCCCAATTACATGCCCTCATAATGTGTTTATGGCAAACAATAAAGCCAATACATTTATAACTATGCAGTAAATTTGATACATCTCTAAGATTTGCTCTTTTTTCAGGGAAATTTCATTGTAATTCCATATCTTATTAATATACACCCACTCCCTCTTGTTTTCAAGTATTCTTTTCTCCATTTCCCtggtttgattatttaatttaataatcatcCAACACTGACATATATAtgcaattattaatataaattcttTAGACACAAAAACCCTGTGGTAAGTAGAACAAACCCTTTGGAACCTGTGTGGAAGCTTCACATTTCAAGTTCGAAGCTATCTTTTTCCAATTAAGATAAGGTTAAATCACGTGTGAAATGCACATGAATGGTTTGAAGCACCAATCCAGGGCAGCCACTGCAAGAGCTGCAGTAGGTGCAGAGTGGACAAAtaacacaga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000009624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009443 True 5881 mRNA 0.40 3 28117365 28181720

Neighbor

gene id symbol gene type direction distance location
XLOC_004773 cacna1g coding upstream 43803 27704015 ~ 28073562 (+)
XLOC_004772 spata20 coding upstream 451774 27589607 ~ 27665591 (+)
XLOC_004771 etv4 coding upstream 548671 27536095 ~ 27568694 (+)
XLOC_004770 meox1 coding upstream 648098 27462225 ~ 27469267 (+)
XLOC_004769 sost coding upstream 781713 27331324 ~ 27335652 (+)
XLOC_004775 LO017791.1 coding downstream 117139 28298859 ~ 28299929 (+)
XLOC_004776 cdk5r1b coding downstream 185837 28367557 ~ 28370484 (+)
XLOC_004777 NA coding downstream 195310 28377030 ~ 28381255 (+)
XLOC_004778 tbkbp1 coding downstream 393143 28574863 ~ 28678323 (+)
XLOC_004779 NA coding downstream 435981 28617701 ~ 28617965 (+)
XLOC_004762 dre-mir-10a non-coding upstream 982398 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 1220749 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 1283173 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 1425314 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 1524067 26589644 ~ 26593298 (+)
XLOC_004786 NA non-coding downstream 751804 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 831853 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 1130845 29312565 ~ 29373414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06982270_06983358 UTS2R coding CI01000063 null 6981946 ~ 6983455 (+)