XLOC_004778 (tbkbp1)


Basic Information

Item Value
gene id XLOC_004778
gene name tbkbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28574863 ~ 28678323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009446
GCAGGACATGAGGTGTTGTCGGTGATGTTTTCTCTTGAATCTTCAGCAGTGgcgctcaaactcctctctctctctctctctctgatcccTCACTGAGCGCATCTGAACCAACAACAGCATCAGCCTCATCATCCTCCAGCACTTCTCTAGTGTCTGGCCCTTCACTGAAGACATGACGGCAGACGACGGATCTATAAACCACCGTTGAGGATCAGGTGTCATGGAGTCTCTCTTCGGGGGTCAGCTGGGCTTGTTGGGGGGCAGCGAGGGTCTGAAAGAAGACGGCTGCGGGGTGGGCTGGTCCAACTCTCCCTTATCAGACGACATGTATTCGGCCTCCCAATTCGCCCTCATCAGTGCCTACCAGGACATCAAGACCCGACTGGCTGGCCTCGAGCGAGAAAACGCAGACATCAAGCGAAAACTCAAGATTTATGAGATAAAGttcccCATGATAAGCGAGTTTGGAGAGGACAGAAACTCCTACTGCTCCTTCGAGCCCAAAGACACAGCACTACTTCAGTCAGAGAATGGCAGTCTGCAACAGAGAGTCAACATGCTGACCCTCGAGCTCCAAAAGAGCAAAGAGCGTGAGGAGCAGCTTGAAGATGTCATTCAGGCTTATGAGAAGATCCACATGGAGAAGTCCAGCCTTCAGCGAGACCTGGACAAGATGACGTCTCTAGTGGAGAAACACGTCGAGCGGATCCACGGTTTAGAGGCGGCTTTGAGGCAGAGGGAAAGCTCTCTACACAAACTCAACACACAGCTACAcaacaaagacatgcagtatctGCAACTGCACAGCCCTGACTCGCATaTGCTGGACTGCCCCATGACCCTGCAGAGCTCCCGCAGTCTGGACACCCTCTCTGACCTCAAACTGCAGCGTTTGGAGGCGGAGCTAGAGGGGGCGAGGCATGAGGCTCAGGGGGCGTGTCAGAGGGAGGAGGAGATAAAGGCTGAATGCGAGAGACTGAGGGAGGAGCTGAGGGAACTGCAGAGCAACCACAGACAGAGGGACGTGAGCTCCACATGTGGACAGTGTGATGTGGAGTGGATAAAGAAAGTTGGAGATGAACAAGTAAATCTTGCTTTGGCTTATACTGAACTAACAGAGGAGTTGGGCAAGTTGCAGGCTCTGACCTCAAAACAGACTGAGATACTGCGGAAAGCCTCACAGGAGCCGGCAAGCCCAGTTCAGCGCCACTCTCCTGTCCCTCACCAGAGGCATTCGCCCGTTCCACAGCGCCATTCTCCAATCCAACAGCGCCATTCCCCCATCCAGCAGCGTCACTCCCCTGTGCCCCAGCGGCGCTCCCCTGTGCTGCAGCGTCTCTCTCCGGACATGCACCGTCGCTCGCCCCTACCTGAACTCAGTGACGGCCCTGCATCCTATTCCTGCAGGCCTACTTCCCATCACCTGAGGGCCAGTTTCCAGGGAAGACGCAGTTACTCTGAAGTAGCTGATCCATCAGCTTATCAACGTCCTCCACGGTTCACTCTGGACCCGGTGTCCACCCTGCCGAAACCTCGACCATACGTTGACAGCTACCacaagcagcagcagcaacagcagcagcaacaacaacagcaacacgGAGGAAGCCAGCACATGTTAGTTCAGAGACAGAGCTCTCAGTCTGGGGTTGGAGGCGATGGGGGATTGGTTGAAACTCCACGGCTGTCCAGGGAGTTATCTTTCCACCACTCAGAGGTGTCCCACTTGCATTTCGATCCTCAACCCAGTCCAGCGCCTCTGCATTCATCCCCACAGCCTCCGCAGTCTTCAGAGGATGAGGAGGAGTGGTCCTGCCCTCATCCAATCAGTCCTCCGCGAACACTAGGGGTGTCGAGTCCCTCATCGAGCTCCAGAGGTCCAGCCTCTTGTTCAGCATTCCCTATTCCTTCCCGTCCCAACACCCTAAGCTGCCACCCACCAGGATACCTGCATGCAGAGCACGCCCAGTCTTGGCCATCTATCAATCTGTGGATGGAGACGGAGGAGGAGGGTGATGTCAGGAGCTGCCCATTGTGCCAGCTAATCTTTCCTGTTGGTTACCCTGATGATGCCTTGATCAAGCACATTGACTCGCACCTGGAGAACAGCAAGATCTGACACCCACAGCCACGTTATGACCTTCTGTTGTTCCACAGTTACATTCATTCGCCGCTCCTGGTATTTTTAGCTGGGTGCCTTCAGACAGAATGTAGGCGATGCACCTGTGGCCAGTCTTTCAATTTGATAAGTGAAACGAAGATCAATGACAACCTACGCAACTCATATCTCTATGtattttgctttttctttttttttttttaacaaatgtctTGCAAGATTGTACCATCTTAAACACCAATTATCAGCAATTACACACactaaatagacactccaaatGAGCGTATTGCAATATAAAGGCTCATTTTCTACGCTTCTGGCGACAATTCCCATGATTATTTGCTTTTCGACATATATCGTGATACATTTTATGAAAACTGAGATGTTATGAGGATGCTGTATGGGATGATTTTGAGGAAATTTTACACACACAGCCAATGGTTGCATCATCTGAATTTCAGCACTTTATATAAGCACTTAATATCCAGTTTACCTTTACCAATACTACTAACACTGAGGCAAAAAAGTAAAACCTAacagatattatttattttttaatattccaGGGTGTCACccttaaaaaatatatcttagTTTGGCAGGACTTCCCTTTAAAAAAACTGGATTATTTGTAAGTATCTGTAAATTCACGCTCACATCTATTTTGTTGGTCTTCCGGGGTGTTTGGATGTACAAAAAGgggagtttctttttttatttattataattctaATGTATATAATGATTGCAGCTCTGTGTTTCAGCCAAACACTGACAAAACACCAGTTACTGTTGTTTCTAAAGACAGTAATACTGTGATTCCAGGAGTACACTAGGACGATGGATGGTTTAAtgaaattttaatgtaattacctAAGAAAAATTGTAAAACATCACAGGGCGCAATCAGTTTTTTTAACATACTGTAAATGTATACATGCATTTAAGGtcaattatatgtattattaaccTGTAAATTCAGCTATATAATATAGATATGCATTTTGCAAGCAAACAAActgctgaatattaaaagaaaactATTGGATCTGCTAATAAGTTGTTTTTTTCCATTCGCTGTAACCCAAACAATAAAGTCACCTTGCTGAGTATTTAATTTGCTAGCTATCTTATTATTCCATATTCTTCGATGTGTACCCTATGCTATAAAGTCTTCTTTGTAGTTACTTTCCCTAATTCAAAACGGGGCGCTGGATATGCTACTAACCCAAATGCAGAGGAACTAATTTGGGAAAGTAGCACAAAGAAGTCAGTCATCGCTGGTGCACATGTGTGAAATTACAAAGCCAAATATAGCAAACAGCAATGAGAAGCTGTAAGTGTCTGTCTTATAAATGAGTGGAGGATTCGTCCAACTGGTCATTTAATATAATGTGAAAACTGCTAATATTCTGGAAGAAACCATAACTGATGTTGTAAATATGAATTGTCTATTAAATCACCATTGAATATACCATACTAAAGGCTTAAAAAAAAGTATGGTACGGATATAACTGCAACTGAAATACCATCTATACAACCAAAGACACAGACTGCTTGTTTTCTTTTTACACATGTTCACTTTAAAGCATATTTTGTTGAAATATGGACCATTTTTAAAGGAAAACCCCTGTGAAATTAGTGTGCGCAGACATGGAGCTTGCAACTGGAGTGTAAAGACGATCAATTACtgcaaaaatcacacaaaagTTTCCATATACAGTATTAACTTGTCTTGCACCCTTGTTCAGAATAAAAGCAAAGTAAATCTTCAGCCACTATTCACAAAGATTCGCTCAGGAGTTATTTAAAGAGCTACTGCCGTTTCCTTGCTCCTCAAGACAGTGTTTTTCTCATGGCAAATTAGAAACTGAGTGCTTCTCTGGATGCTCAAAGTACATGGTCGCTCTGTTGCCCTGCAGTTTGGTGTGTGACTTTTtgtgatatttttaaataactcaGGGGATAAAGCTTTGTGAATATGGCTCCTGGACCATACACGACTGGCCTCCACAGAAACAACGGGACAAATCGCCAAATATTAAAGAGCTAAGAGGACACTAATGGGGTAGAGATATTTTGTTATAGGAACAATGTACTTTAAAGAAAGCAGAAAAAAGATGATAAAAAGACACTAAAGTGAATGCATATTGTGTCAAAAACTCTTctgtaaatattatgaaataaactgGAACATGCACTGAC

Function

symbol description
tbkbp1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

GO:

id name namespace
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

ZFIN:

id description
ZDB-GENE-100203-1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

Ensembl:

ensembl_id ENSDARG00000061473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009446 True 4324 mRNA 0.45 10 28574863 28678323

Neighbor

gene id symbol gene type direction distance location
XLOC_004777 NA coding upstream 193608 28377030 ~ 28381255 (+)
XLOC_004776 cdk5r1b coding upstream 204379 28367557 ~ 28370484 (+)
XLOC_004775 LO017791.1 coding upstream 274934 28298859 ~ 28299929 (+)
XLOC_004774 CABZ01027646.1 coding upstream 393143 28117365 ~ 28181720 (+)
XLOC_004773 cacna1g coding upstream 501301 27704015 ~ 28073562 (+)
XLOC_004780 tbx21 coding downstream 70866 28749189 ~ 28770817 (+)
XLOC_004781 pnpo coding downstream 121665 28799988 ~ 28807184 (+)
XLOC_004782 cdk5rap3 coding downstream 147412 28825735 ~ 28837752 (+)
XLOC_004783 nfe2l1b coding downstream 176087 28854410 ~ 28866095 (+)
XLOC_004784 phkg2 coding downstream 210652 28888975 ~ 28901184 (+)
XLOC_004762 dre-mir-10a non-coding upstream 1439896 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 1678247 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 1740671 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 1882812 26691819 ~ 26692051 (+)
XLOC_004786 NA non-coding downstream 255201 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 335250 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 634242 29312565 ~ 29373414 (+)
XLOC_004797 BX072570.2 non-coding downstream 753752 29432075 ~ 29432191 (+)
XLOC_004799 BX004794.2 non-coding downstream 1133521 29811844 ~ 29811960 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_07252228_07279272 TBKBP1 coding CI01000063 null 7252050 ~ 7280398 (+)