XLOC_004772 (spata20)


Basic Information

Item Value
gene id XLOC_004772
gene name spata20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27589607 ~ 27665591 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009440
AACAGCTCCTGCGTGAATCCGCACCACGCGCAGGTCTGTGCGGATCTATGATGCTGATGAGACTGAGCTCCGCATGGTCAACATCACCGACCACCATCAAGCACATCTCACAGGCCAAGCTCTTCACCAGATCCCTGCGAAAAGACAACCATCATACTTTAACCAAGAACCGGTGCGCTCGACTACCACACGACTACTGGTTTGGCCAAAAGTCAGTACCTGTCAGTACCAGATTGTCCTGGGACAGCTTCAGGTTTTCTGGAGTGTTTTTCTTTAGCATGGCATCAGGAAGTGACAGTCCGGACAGACTAAAGACCCCAAAGTATACCAACCGCCTGAGTCAAGAGAAGTCCTCCTATCTTTTACAACATGCACACAACCCTGTGGACTGGTATCCATGGGGCCAAGAAGCCTTTGATAAAGCAAAATGTGAAGACAAGCCTATTTTTCTTTCAGTGGGTTATTCCACCTGTCACTGGTGTCACGTAATGGAGAGGGAATCCTTTGAGGATGAAGAGATTGGAAAAATACTCAGCGACAACTTTGTATGTATAAAGGTGGACAGAGAAGAGAGACCTGATGTGGACAAAGTTTATATGACATTTGTGCAGGCAACCAGTGGTGGAGGAGGCTGGCCAATGAGTGTGTGGCTCACACCAGATCTTAAACCGTTCATAGGTGGAACATACTTCCCACCCAGAGACAGCGGAAGAAGACCTGGACTGAAAACTGTGCTTTTACGGATAATAGAGCAATGGCAGACTAATCGAGAAACCCTAGAGTCCAGTGGAGAGAGAGTACTAGAAGCTCTCAGGAAGGGGACGGCAATATCTGCCAGCCCTGGAGAAACTCTTCCACCCGGTCCAGATGTTGCCAACAGATGTTACCAACAGCTGGCACACTCTTTTGAGGAAGAATATGGGGGTTTTCGAGAGGCACCGAAATTCCCTTCACCAGTGAACCTGAAGTTCCTGATGTCATTTTGGGCAGTAAACCGTTCTAGTTCTGAGGGAGCAGAAGCGCTGCAAATGGCTCTTCACACTCTCCGAATGATGGCACTAGGGGGCATTCATGACCATGTGGCACAAGGCTTCCACAGATACTCCACAGACTCCTCCTGGCATGTTCCTCACTTTGAAAAGATGTTATACGATCAAGGCCAACTTGCTGTGGCATATATCACTGCTTACCAGGTGTCTGGGGAGCAACTATTTGCAGATGTGGCTCGTGACGTGTTGCTTTATGTCTCCAGAGACCTAAGCGATAAGTCTGGCGGCTTCTATAGCGCTGAGGATGCAGATTCCTTTCCCACAGTGGAGTCCACAGAGAAGAGAGAGGGAGCGTTTTGTGTGTGGACAGCAGGAGAGATCAGAGAGCTGCTTCCTGATATCGTGGAAGGCGCCACAGGAGGTGCAACACAGGCGGATATCTTCATGCATCATTATGGTGTGAAAGAGCAAGGCAACGTGGATCCCGCTCAGGACCCCCACGGAGAGCTGCAGGGTCAAAATGTGCTGATTGTGCGTTACTCAGTGGAGCTCACCGCTGCTCACTTTGGCATCAGTGTGAACAGGCTGTCCGAGCTGCTGTCCGAAGCCAGAGCCAAGCTGGCCGAGGTGCGGAGAGCTCGCCCACCTCCTCACCTAGACACCAAAATGCTAGCTTCCTGGAACGGGCTGATGTTGTCTGGGTTTGCTCGAGTCGGAGCTGTTCTGGGTGACAAAGCTCTGCTGGAAAGAGCTGAGCGAGCAGCTTGTTTTCTCCAAGATCACCTGTGGGACGAAGACGGACAGAGGATTCTCCATTCCTGTTACCGTGGAAATAACATGGAGGTGGAGCAAGTTGCATCTCCCATCACAGGCTTCCTGGATGACTACGCCTTTGTGGTGTGTGGGCTGCTGGACCTGTTTGAGGCCACGCAAAAGTTTCGCTGGCTGCAGTGGGCCGAAGAACTCCAGCTGAGGCAGGATCAGCTCTTCTGGGATTCCCAGGGCAGTGGATATTTCTGCAGCGACCCCTCGGATCCGACGCTCCTGCTGGCTCTCAAACAGGatcaGGACGGTGCTGAGCCTAGTGCAAACTCAGTGTCAGCCATGAATTTGCTCCGGCTTTCACACTTCACAGGCCGGCAGGACTGGATCCAGCGCTCGGAGCAGTTGCTGACCGCCTTTTCCGATCGACTGCTTAAGGTGCCAATCGCCCTGCCAGACATGGTCCGCGGTGTCATGGCCCACCATTACACTCTTAAACAGatTGTTATCTGTGGCCTGCCTGATGCAGAGGACACTGCAAGTTTGATTTCTTGTGTCAACTCGCTGTTTCTGCCCCATAAAGTCCTGATGTTGGCAGATGGCAACACAGAGGGTTTCCTTTACGATAAGCTTCCTATTCTCTCCACCCTGGTTCCTCAGGATGGCAAAGCAACCGCGTATGTGTGTGAAAACTTTGTCTGTGCCCTTCCAGTCACCTGCCCGCAGGAACTGAGGAGACTGCTGATGGAGTGAGCTCTGCTGTCACACCACATAAACATCCCACCGCTATATATCTCACATTATTACACCAGTAGCCAACCGCAGTCGTcaacgaataaaaaaaaatgcactgtaaGACGTTATCCAGTGGCAAGGCAAACCTTTAGGGGTTGCTCTAGTTGTAATGTTGGGCTTCGGTCCAACACAAGATTGTAGTCTGGGGAGATGAGAGTACAATGACATCTTAATGTAAGGAGGAACGCTGAGACTAAAGCTTTTATAGGTTTGTCTCATGGGCTCTTGATCTATGATGACAATCAAGCATGCTTCTTTACTACTTATCTATTCAGTGCAGCTGATGAGCCCTGGAAATGCAACTATCTACTAGATTTAGCGGAATGAGACATACAATGTATGTATCGTACACTAGAGTTCAGACTCAGTGGAATATAATAAATCCTCATGGAGTAAA

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7269 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

Ensembl:

ensembl_id ENSDARG00000013880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009440 True 2943 mRNA 0.50 16 27589607 27665591

Neighbor

gene id symbol gene type direction distance location
XLOC_004771 etv4 coding upstream 20913 27536095 ~ 27568694 (+)
XLOC_004770 meox1 coding upstream 120340 27462225 ~ 27469267 (+)
XLOC_004769 sost coding upstream 253955 27331324 ~ 27335652 (+)
XLOC_004768 dusp3a coding upstream 283784 27285994 ~ 27305823 (+)
XLOC_004767 arl4d coding upstream 343850 27243059 ~ 27245757 (+)
XLOC_004773 cacna1g coding downstream 38424 27704015 ~ 28073562 (+)
XLOC_004774 CABZ01027646.1 coding downstream 451774 28117365 ~ 28181720 (+)
XLOC_004775 LO017791.1 coding downstream 633268 28298859 ~ 28299929 (+)
XLOC_004776 cdk5r1b coding downstream 701966 28367557 ~ 28370484 (+)
XLOC_004777 NA coding downstream 711439 28377030 ~ 28381255 (+)
XLOC_004762 dre-mir-10a non-coding upstream 454640 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 692991 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 755415 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 897556 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 996309 26589644 ~ 26593298 (+)
XLOC_004779 NA non-coding downstream 952110 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1267933 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1347982 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 1646974 29312565 ~ 29373414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_06663858_06707601 SPATA20 coding CI01000063 null 6663858 ~ 6707704 (+)