RNA id: TCONS_00009448


Basic Information

Item Value
RNA id TCONS_00009448
length 2155
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_004781
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28799988 ~ 28807184 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTGATGACGCAGCCGCGGAACAAGCATGAGACGTCTGTTAAGGTTTTGCACGTCGAGGAACATCAGCAATATTTTGAAGTTTATTCAACCCAGTGTTGCCTCGAGAGTCCACAGTCCATCGTTATTTACCTCGTTTTTCTGCAGGACATTTTCGGACAGCGGCACCAGCATGGATCTTAGTAACATGAGAAAGACCTATAAGAGCGATCAGGAGTGTTTTGAGGAGAATCAACTTGCATCTTTAGATCCTATTAAGCAATTCGGCAGCTGGTTTGATCAGGCCACCAAGTGCCCTGAAGTGGGAGAAGCCAATGCAATGTGTCTTGCAACAGCGACTAAGGACGGTCACCCCTCTGCACGCATGGTCCTTCTAAAAGGCTACAGCGAGGAGGGATTTTGCTTCTTTTCCAACTATGAGAGTCGGAAAGGTTCAGAGCTGGAGAGCAATCCTCACGCCTGTCTTGTCTTTTACTGGGAACCGTTAAACAGGCAGATTCGCATTGAAGGCACTGTAGAGAGAATCCCATACGAGAAGTCACGTGAATACTTCCACTCGAGGCCCAAAAGCAGTCAGATCGGTGCTGTTGTGAGCAGGCAGAGTACAGTAATACCCAGCCGACAATACCTAAGAGACAAGAATGCAGAGCTTGAAGAGAAGTTCAAGGACACAGATGTACCAATGCCAGATTACTGggGTGGATACATTGTGAAACCCTCCCTGATTGAGTTTTGGCAGGGTCAGACTAACAGATTACATGATCGGATAGTCTTTTTGCGGCCAAAAGGGGGAGAGACCGAGCTGGGGGACATGCAGCATCAAGCAGAGGGAGGCTGGATTTACCAGCGCTTGTCCCCTTGATAGTCCACATGCTGTGAAGTCAACGTTATAGTATGTGACATCAATACATCATCATTATTTCTTGGCAGTAACTGTCATTTAAAATCCCACCAGGGCAATGTTGAAGATTTATCACTCCATCAATGTCCTGCGTTCATGTTGTCTTAACCAGAATCAGAAAGGAAGTTTCATCTGTTGATAACTGTAGATGTGGTTTTATGAATAGAAGTCATGTTGTGCTATAAATGAAGGCTATTTCATGAAAAAACtaatatttgctgtttattaacTCTGCCTCAAAAAAGACTATCAAAGATGTAGCAGActtttttttcctcagaaaaTGTAAAGGGGATTTTTGGCTAAAAATGTGGTTCTTGGTGATTTCTGAAAGTCTAACGCCACTTTtacaaaagagaaaacaaaatcacatgcagTGGAAAAGAAAtgcataataatttaatataataatgttataaatgcATGTTAATTACattaatctaattatttattttgcctCTAGATACCTCTAAAGATGCCAGTAGCAGATGACTTTATTTAATGAATCACCAAAGACCacagttttgacaaaaaaaaattataatctctTCTAATGTACAAACAGTGTAATTTTGGATGGCCCAATGTTGAGTAAAGCTAGTTTACATTTTCAAGTGAgcctttaagcctttaaatgacctTAGTATTCTTAGTTCAGTCTGTTGACTGTCTGATGGTTATTCATAATAGAAAAGCACAGCTGTACTTGACACAGCAGTCACAACTGTAGTTTCAGAGAACAGACTTTGGACTTCtgtcacaacaaacaaaaaaaataagaaaaaagcaaTCAACATGTTGATGTACTTAATGTGTAAtctaaatgtgaaatatttgatTAGGTTGTTTGTTATAAATGTGCCAAACTTCGAGCTAATCTAAAATACTTGCTGTATTGACATTTTGTGTTAATGTGCAACcaaaaaatgagtaaacctgtttcATTTTTCCAATGATGTTCGTCGTGTTTTTGTTTCGCCAGCAGATGGCGGCGTTGTTTGCTGTTTATTGCAATACCAGGcaattacaatgaaaataaagtaGCAAATGTATAATAGAACAATGCAAATATAACCCTTTGCACAAAAATAGAATAACAATTTTAAAGAAGTATTACAATGGTATGTCATAGAGAAATATGgtgtgaaagaaaaaaagacaataaaatgaaAGAGatgaaaaactgaagaaaaaaacacatgaaatacaaatgaatgcaaaacatttaataaagCTCATATTTTAGAAGCTTCAA

Function

GO:

id name namespace
GO:0042823 pyridoxal phosphate biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008615 pyridoxine biosynthetic process biological_process
GO:0010181 FMN binding molecular_function
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors molecular_function
GO:0004733 pyridoxamine-phosphate oxidase activity molecular_function

KEGG:

id description
ko00750 Vitamin B6 metabolism

ZFIN:

id description
ZDB-GENE-060602-2 Predicted to enable pyridoxamine-phosphate oxidase activity. Predicted to be involved in pyridoxal phosphate biosynthetic process. Predicted to act upstream of or within pyridoxine biosynthetic process. Is expressed in several structures, including digestive system; female organism; male organism; nervous system; and spleen. Used to study pyridoxamine 5'-phosphate oxidase deficiency. Human ortholog(s) of this gene implicated in pyridoxamine 5'-phosphate oxidase deficiency. Orthologous to human PNPO (pyridoxamine 5'-phosphate oxidase).

Ensembl:

ensembl_id ENSDART00000022724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010744 lncRNA upstream 182023 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00010945 lncRNA upstream 418733 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1567337 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00009425 lncRNA upstream 1570130 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009402 lncRNA upstream 1903372 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009458 lncRNA downstream 126340 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA downstream 135050 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010745 lncRNA downstream 505381 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 505381 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 1346431 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00009447 mRNA upstream 29171 28749189 ~ 28770817 (+) True XLOC_004780
TCONS_00009446 mRNA upstream 121665 28574863 ~ 28678323 (+) True XLOC_004778
TCONS_00009445 mRNA upstream 429504 28367557 ~ 28370484 (+) True XLOC_004776
TCONS_00009444 mRNA upstream 500059 28298859 ~ 28299929 (+) True XLOC_004775
TCONS_00009443 mRNA upstream 618268 28117365 ~ 28181720 (+) True XLOC_004774
TCONS_00009449 mRNA downstream 18551 28825735 ~ 28837752 (+) False XLOC_004782
TCONS_00009450 mRNA downstream 18610 28825794 ~ 28835146 (+) True XLOC_004782
TCONS_00009451 mRNA downstream 47226 28854410 ~ 28866095 (+) False XLOC_004783
TCONS_00009452 mRNA downstream 47779 28854963 ~ 28855769 (+) False XLOC_004783
TCONS_00009453 mRNA downstream 48967 28856151 ~ 28862155 (+) True XLOC_004783
TCONS_00009428 other upstream 1565567 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1579399 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1636924 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 1665021 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009383 other upstream 3151745 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009459 other downstream 138348 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009467 other downstream 206389 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 624891 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 956859 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 1004660 29811844 ~ 29811960 (+) True XLOC_004799

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_07372666_07374936.mRNA True 715 mRNA 0.46 6 CI01000063 7372666 ~ 7374961 (+)