RNA id: TCONS_00009462


Basic Information

Item Value
RNA id TCONS_00009462
length 2378
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_004787
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28955766 ~ 28960633 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTAGTCCGCGGAAACTCTTCAGTAAGAACGCTAAAGGAACTGAGGTATGGATAGTTGCGATATAAAATAATTCAGATCATTTTGGAGGGATTCCCCAAGTGGCGAGTGAGGAAGTCATGAAGGCTCACATATCTGCGTTGGCTGGGTAATTTCGTCATGGTCCTAAAGCCGCCGACCTTCTCCCGAGATTGAGCGATTTTACAATTCAATATCAAAGACACGCGTGCAGCCTCTTACGAGAACACAAAAGCATCCTCAGTATGGCTTCACCCCAACCAGGTATCCCATCAACAACAGAGCAGTATACACCACCACCATATGAGTCTGAGCCTAGTAAAGAACTAGACAATGTGCCAGAACAAGCTACAAGAAAGAGAGGCAAAGGGAGACcaccaaaatctttacacacttTTAAGTGCTCGAGCTGTCAGGAGGTCTTTACCAGCCCTTCGGCCTTACAGAGCCACAAGCTGTCAGTACATGGTAAAGACAAACAGCAGCAATACACCTGTGGTAAATGCACTAAGATGTTCTCTACCCGAGCACAGCTTTCTAAGCATCAGCGCTCCCATTCACCTCAGCGTCCGTTCCAGTGCCTGCAGTGCCATAAGGCTTATAAGACTCCAACGGAATTACGCAACCACAGTCGctcacacacaggggagaaaccaTTTGTTTGTTTGGACTGTGGCAAGGCATTCATGCAGGCCATTTGCCTGCGTATCCACATGACACAGCACAGTGGCGAAAGGCCTCACTCGTGTCCTCTCTGCTCCAAGAGTTATCCCACACTTTCCAAACTCAAAGTGCACCAACGATCCCACACCGGTGAAAAGCCTTACTTTTGTgttgagtgtgggaagagttttgcaGACCCTTCAGTTTACCGCAAGCATCGGCGTAATCACCTAGGCCACCGGCCGTATTCCTGTGCGCAGTGTGGTAAAACTTACACAGAGCTGAAGGACTTGAAAAATCATGAGCGTTCACACACAGGTGAGAAGCCTTTCCTGTGCTCAGACTGCGGCAAAGCCTTCTCCCGATCCTCATCATTGGCGTGCCACTTGCGAATTCACTCCAAAAGCAAGCCATATCAGTGTGAGCAGTGTGGAAAAGGTTTTACCCAACTGTCCTCATACCAGTCTCACCTTCGCACACACTCTGGTGAAAAACCATTCTTATGCCCACAGTGTGGTAAGATGTTCTCGGATCCCTCTAGTTTCCGCCGACACCAACGGGCACATCAAGGATTCAAGCCATACCCTTGCGACAAGTGCACTAAGAGGTTTCGGCAACCCGCAGATCTTGCTGTGCATCAACGTGTGCACTCTGGCCAGCGACCCTATAAATGCCAACGTTGTGATAAAGCTTTTGTAGCTTCTTGGGATCTTCGGCGCCACATGCTAGTGCATTCCGGACTGCGTCCTTTCGCTTGCACTGAGTGTGGCAAGTCTTTTACGGAGCGTTCCAGCCTGAACAAACACAGAAGGGTGCATTCAGGAGAGCGTCCATACAAATGCCAGCTTTGCTTCAAGTCGTTTGTTGTGTCTTCGAGTTTGCGCAAGCATGAGAGGACACACTTATCCGAGAGGCCGATACAGGTTCATGTCACTCCAGAATCAGCTTCAGTGTTTCCCAGCACCCTTCCCCAGTTCTCCTGCTCTCACTGTGATATGATATTTGGGACATGGGAGGAGGTGCAGGCCCACACCAGCCTTCACACCATCTCTCCCCCATCTGATCCTTCAGTTTTGGCTGTACCTGTCAGCCCACATGTATGTGTGACTTGCCAGGAAGAGTTTGTTAATCTGGCTGATCTTCAGGCACACGAGAAACTGCATCCCAAGCCTCGACCCCACATTTGTGACCAGTGTGGAAAAGGTTTTCTGAATAAAGCTGGTCTTCGTAAACACCAGCGTATCCACTCAAGTAATCGGCCACATAGTTGCAATGTTTGCGGGAAGGCTTTTCTTTTTGCTGCTTATCTACGCAAGCACTTACGCACCCACCGTGACACAGAGTCCTTACCGTCTCTGCCTCAGACAGACATGGCACACACCCAGCCCTTGCCATCCCCACCAAGTGCTGCGTCACCTTCGGGATCAGAACCCACCGCTATTTCCCTTACTGTTCCTGTAACCTTTCAGACAATACCAGCCCATGTGTATATGGACAAAGAAGACGGACTCTGAACTTATTGATGACTTTGTCGGATGCTTTGAACATTTGTTTAGACAATGTTCACATTTTTGTTACTGCTATTCTATACTAACAGGACAGTGAAAGCGTTGAAAACAGAAAAGccaatgcattgttttttttgtttttttttaaagatggatTAAATGCATCAGTACACAAAATTTCTCATAAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-46 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF668 (zinc finger protein 668).

Ensembl:

ensembl_id ENSDART00000033878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009458 lncRNA upstream 10224 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA upstream 10224 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010744 lncRNA upstream 338409 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00010945 lncRNA upstream 575119 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1723723 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010745 lncRNA downstream 351932 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 351932 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 1192982 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00010948 lncRNA downstream 1202121 30162754 ~ 30198532 (+) False XLOC_004802
TCONS_00010949 lncRNA downstream 1240013 30200646 ~ 30211446 (+) False XLOC_004802
TCONS_00009456 mRNA upstream 23092 28910871 ~ 28933282 (+) False XLOC_004785
TCONS_00009457 mRNA upstream 23093 28910886 ~ 28933281 (+) True XLOC_004785
TCONS_00009455 mRNA upstream 23823 28910762 ~ 28932551 (+) False XLOC_004785
TCONS_00009454 mRNA upstream 55190 28888975 ~ 28901184 (+) True XLOC_004784
TCONS_00009453 mRNA upstream 94219 28856151 ~ 28862155 (+) True XLOC_004783
TCONS_00009463 mRNA downstream 1957 28962590 ~ 28963291 (+) False XLOC_004788
TCONS_00009464 mRNA downstream 1957 28962590 ~ 28963476 (+) True XLOC_004788
TCONS_00009465 mRNA downstream 25675 28986308 ~ 28988358 (+) True XLOC_004789
TCONS_00009466 mRNA downstream 35309 28995942 ~ 29012892 (+) True XLOC_004790
TCONS_00009468 mRNA downstream 94274 29054907 ~ 29103117 (+) False XLOC_004792
TCONS_00009459 other upstream 10728 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009428 other upstream 1721953 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1735785 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1793310 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 1821407 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009467 other downstream 52940 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 471442 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 803410 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 851211 29811844 ~ 29811960 (+) True XLOC_004799
TCONS_00009481 other downstream 999307 29959940 ~ 29960054 (+) True XLOC_004800

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_07459509_07461455.mRNA True 1912 mRNA 0.49 2 CI01000063 7459457 ~ 7461821 (+)