Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009468 |
| length | 2324 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 10 |
| gene id | XLOC_004792 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 29054907 ~ 29105525 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042391 | regulation of membrane potential | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:1902476 | chloride transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:1902711 | GABA-A receptor complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0004890 | GABA-A receptor activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005230 | extracellular ligand-gated ion channel activity | molecular_function |
| GO:0005254 | chloride channel activity | molecular_function |
| GO:0030594 | neurotransmitter receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080303-26 | Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; diencephalon; eye; and telencephalon. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi). |
| ensembl_id | ENSDART00000152936 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009458 | lncRNA | upstream | 108757 | 28933524 ~ 28946150 (+) | False | XLOC_004786 |
| TCONS_00010946 | lncRNA | upstream | 108757 | 28942234 ~ 28946150 (+) | False | XLOC_004786 |
| TCONS_00010744 | lncRNA | upstream | 436942 | 28617701 ~ 28617965 (+) | True | XLOC_004779 |
| TCONS_00010945 | lncRNA | upstream | 673652 | 28377030 ~ 28381255 (+) | True | XLOC_004777 |
| TCONS_00009431 | lncRNA | upstream | 1822256 | 27231744 ~ 27232651 (+) | False | XLOC_004766 |
| TCONS_00010745 | lncRNA | downstream | 209448 | 29312565 ~ 29373414 (+) | False | XLOC_004796 |
| TCONS_00009476 | lncRNA | downstream | 209448 | 29312565 ~ 29373414 (+) | True | XLOC_004796 |
| TCONS_00010947 | lncRNA | downstream | 1050498 | 30153615 ~ 30193020 (+) | False | XLOC_004802 |
| TCONS_00010948 | lncRNA | downstream | 1059637 | 30162754 ~ 30198532 (+) | False | XLOC_004802 |
| TCONS_00010949 | lncRNA | downstream | 1097529 | 30200646 ~ 30211446 (+) | False | XLOC_004802 |
| TCONS_00009466 | mRNA | upstream | 42015 | 28995942 ~ 29012892 (+) | True | XLOC_004790 |
| TCONS_00009465 | mRNA | upstream | 66549 | 28986308 ~ 28988358 (+) | True | XLOC_004789 |
| TCONS_00009464 | mRNA | upstream | 91431 | 28962590 ~ 28963476 (+) | True | XLOC_004788 |
| TCONS_00009463 | mRNA | upstream | 91616 | 28962590 ~ 28963291 (+) | False | XLOC_004788 |
| TCONS_00009462 | mRNA | upstream | 94274 | 28956374 ~ 28960633 (+) | True | XLOC_004787 |
| TCONS_00009471 | mRNA | downstream | 28572 | 29131689 ~ 29208517 (+) | False | XLOC_004793 |
| TCONS_00009470 | mRNA | downstream | 28572 | 29131689 ~ 29208517 (+) | False | XLOC_004793 |
| TCONS_00009472 | mRNA | downstream | 70406 | 29173523 ~ 29211598 (+) | True | XLOC_004793 |
| TCONS_00009473 | mRNA | downstream | 133157 | 29236274 ~ 29237815 (+) | True | XLOC_004794 |
| TCONS_00009474 | mRNA | downstream | 137007 | 29240124 ~ 29270362 (+) | False | XLOC_004795 |
| TCONS_00009467 | other | upstream | 41217 | 29013573 ~ 29013690 (+) | True | XLOC_004791 |
| TCONS_00009459 | other | upstream | 109261 | 28945532 ~ 28945646 (+) | True | XLOC_004786 |
| TCONS_00009428 | other | upstream | 1820486 | 27231295 ~ 27234421 (+) | False | XLOC_004766 |
| TCONS_00009426 | other | upstream | 1834318 | 27218993 ~ 27220589 (+) | True | XLOC_004765 |
| TCONS_00009421 | other | upstream | 1891843 | 27156943 ~ 27163064 (+) | False | XLOC_004764 |
| TCONS_00009477 | other | downstream | 328958 | 29432075 ~ 29432191 (+) | True | XLOC_004797 |
| TCONS_00009479 | other | downstream | 660926 | 29764043 ~ 29767260 (+) | True | XLOC_004798 |
| TCONS_00009480 | other | downstream | 708727 | 29811844 ~ 29811960 (+) | True | XLOC_004799 |
| TCONS_00009481 | other | downstream | 856823 | 29959940 ~ 29960054 (+) | True | XLOC_004800 |
| TCONS_00009482 | other | downstream | 867396 | 29970513 ~ 29970629 (+) | True | XLOC_004801 |
