RNA id: TCONS_00009470


Basic Information

Item Value
RNA id TCONS_00009470
length 2647
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_004793
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 29131689 ~ 29211598 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttccgaacatttttttttgtaaaaactgtgatatttcaattgcatccactcccatattaaaaaatactatagtaatgtatactgtagtgcttttgaaccatgttataacatagcctatttaaattttatagttgctctggtatcacaacaactataaacacaacccaatactgaaaaaaacatgttcaaaatgcaataatattgactataaatcaccatagtattttttcatgaggtcattcgtctgcgataaaaaacgcgaacgagatctccgTCACTGGTGACGAttccaggtggctaaacagcgagattcagcaggtgtccgacttctgatgtaatttttgagccctcctcttactgcgcacgcctgctctcgtttacaatgcagtcaaggcgaggcgcacctcaaacgagcctacTATTTACATATGAGCTGTCCTTGAAACATGCTTCCATAATATATTTTACGAAAATATATCTGCTATTAcgccttttattattatttaccggCGCTCAATCGTTTTACAAACATCTTTGACATAAACGCAATTTAGCGCCATCTTCCGTCTCTCAAGATTGTGTACCTTCTGTGATAAGGATGGCCTGTGGAGACTTTGGGCTTCTACTTTTATGATGAATATGCATCGACAGAAGCTCGAGAATGAGACGAAAACATCGCTTGGAACACAAAGAACCGGATTTGAAGAGGGTGCTGTCCTTTCCTCCATATCCAGGGGATTATCTGCACCCAGTGGTGTACGCCTGCACTGCAGTGATGCTGCTCTGCCTGCTAATTTCTATCATGACATACATTGTGCACCACAGCATAATCCGAATCAGCAGGAAAGGATGGCACATGCTCCTCAACTTCCTCTTCCACACTGCCATGACGTTTGGGGTGTTTGCAGGAGGCATCAACCAGATCAAGTACCCTGTGATCTGTCAAGTGGTTGGCATTATCTTGCACTACTCCTCCCTCTCCAGCATGCTGTGGCTGCTCTTCACTGCCAGGAACGTCTGCAAGGAGGTGTCCAAGGCTCCGCCCATACCTCAGGACAGGGACCCTCCCACTCAACCACGCCCGAAAGCCACCATTTTTAGGTTTTATCTGGTCAGTGGTGGGGTCCCGCTAATCATAGTCGGCGTTACAGCTGCTGTTAACTTGGATAACTACGGTAGCAGAGATGACGCCCCTTACTGTTGGATGGCCTGGGAGCCCAGTCTGGGGGGTTTCTACGGACCAACTGCCTTCTTGGTCTTGGTAATGTGCATCTACTTTCTGTGCACATACGTACAGCTAAAGCGGCATCCAGAGCGCAAGTACGAGCTCAAGGCTATGACAGAAGAACAGCAGCGTCTGGCTGTGGCTGAAATTGGCCACTGTCACGCTGTCAGCGGAGAGCCAGGTGAGCACGGCGATCACACTGGCTGCACGGCCATCACAGCCTCAATGCTGGCCAACGAGCACTCGTTTAAAGCTCAGCTTAGGGCCACCGCCTTCACGCTCTTCCTCTTCCTGGCCACCTGGGTTTTCGGAGCACTCGCTGTATCACAGGGCCATTTTCTAGACATGATCTTCAGCTGCCTGTATGGAGCCTTTTCGGTCACATTGGGGCTTTTTTTGCTCATTCAGCACTGTGCAAAACGTGACGATGTGTGGCATCGCTGGTGGGCTTGTTGTCCTAATAAACCAAAGGTGGAGGTCAATGGGGAAGCAGCGGGGAATGCCATTCCAACTACACAAAGTCACAGCCATACGCCATCTCACGGGCAGAATCAAATCCACTGCCAGGTTGACTCATCCTGTTTGGGGAAACCTCTGCTCTCCCCACACCTCTCACCCCACTGCAAGTTGGGTAGCCTCCCCTCTACCCAGAACCACACAAGCACCTGCTGTGCCACTCTACACAGTCCTTCTTCTCTAATCGGGAGCTCGACTCGCCCCCAGTCCCTCCCGGATGAACTGCCCCGGCCAACCCTTCCCCTTCAGAGCTGCCTGAAGGACAGATCTAAGACTCGCTCCTTCAACCGACCTCGGCCCTGCCTCAGGGACTACTCCTACCACATGACCTCCACCAGCATGGACGGAAGCGTCCACAGCTCCCACCTGGACAGCCCCCACAGCGTGCACCTGGACAACCCTCTGACCTGCCACACATCACACCTGGACACCCAGCTGTCATGTCATAGCCCTCATCCGGACAACCAGCTGCGCTGCCCGAGTCCCATTCCTCACCTCGAGACTCTGGCCTCGCACGGTCTCCACGACAGCCTCTCCTGCCATAGCGCACACTTGGACAGTCAGCTCTCCTGCCACAGACACATGTGCTGTGCCAAAGCAGACCCGTTCTCGAGCATATGCTGCCCTAATGCTGACCCATTTGTCAGCCCTTGCCAGGCAGAGGATCCAGACATGGGATCGTTGATGTACAGTTGCGCCAAAATGGCAGATAAAGAGGACGAAAGCATGCTGCATTTGGATATAACCCCTCCACGAGTGAGCCATGCCACGCTCGGCAGGAAAGGCACCCTCAGCCGGAGAGGGACACTGAGCCGGAACAGTAGTCAACATGAGGATTACGCAATTACGTCTGACTCCACAGGTAACATTAGGACTGGGCCTTGGAAAAACGAGACAACCGTGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-101 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in glutamatergic synapse; plasma membrane; and postsynaptic density. Is expressed in brain; eye; liver; ovary; and testis. Orthologous to human ADGRA1 (adhesion G protein-coupled receptor A1).

Ensembl:

ensembl_id ENSDART00000108795

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009458 lncRNA upstream 185539 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA upstream 185539 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010744 lncRNA upstream 513724 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00010945 lncRNA upstream 750434 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009431 lncRNA upstream 1899038 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010745 lncRNA downstream 104048 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA downstream 104048 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00010947 lncRNA downstream 945098 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00010948 lncRNA downstream 954237 30162754 ~ 30198532 (+) False XLOC_004802
TCONS_00010949 lncRNA downstream 992129 30200646 ~ 30211446 (+) False XLOC_004802
TCONS_00009469 mRNA upstream 26164 29055143 ~ 29105525 (+) True XLOC_004792
TCONS_00009468 mRNA upstream 28572 29054907 ~ 29103117 (+) False XLOC_004792
TCONS_00009466 mRNA upstream 118797 28995942 ~ 29012892 (+) True XLOC_004790
TCONS_00009465 mRNA upstream 143331 28986308 ~ 28988358 (+) True XLOC_004789
TCONS_00009464 mRNA upstream 168213 28962590 ~ 28963476 (+) True XLOC_004788
TCONS_00009473 mRNA downstream 27757 29236274 ~ 29237815 (+) True XLOC_004794
TCONS_00009474 mRNA downstream 31607 29240124 ~ 29270362 (+) False XLOC_004795
TCONS_00009475 mRNA downstream 31666 29240183 ~ 29251464 (+) True XLOC_004795
TCONS_00009478 mRNA downstream 555029 29763546 ~ 29818209 (+) False XLOC_004798
TCONS_00009483 mRNA downstream 837803 30046320 ~ 30192619 (+) False XLOC_004802
TCONS_00009467 other upstream 117999 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009459 other upstream 186043 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009428 other upstream 1897268 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009426 other upstream 1911100 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009421 other upstream 1968625 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009477 other downstream 223558 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 555526 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009480 other downstream 603327 29811844 ~ 29811960 (+) True XLOC_004799
TCONS_00009481 other downstream 751423 29959940 ~ 29960054 (+) True XLOC_004800
TCONS_00009482 other downstream 761996 29970513 ~ 29970629 (+) True XLOC_004801

Expression Profile

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