RNA id: TCONS_00009391


Basic Information

Item Value
RNA id TCONS_00009391
length 1048
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_004743
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26467847 ~ 26487363 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTTTATCTGTCATGGATGCAAATATGATACCAAAATTCACCACTAAAGAGGAGGAAATTGACTTCTGGAAGGCTCTTTCACTCAAGTACAAAAAAAGTTATAAGGAGGCACAGGAGGAGTTGCTGGAGTTTCAAGAGGGCAGCAGAGAGCTGGAAACCGAGCTGGAGACACAACTGGGCCAAGCGGAGCATCGAATCAGAGACTTGCAGGCAGACAATCAGAGACTGCAGCATGAGCTCGACTCGCTCAAGGAGAAGCTGGAATATCAGTATGCTCAGAGCTATAAACAGATCTCTGTGCTGGAGGACGACCTCAGCCAGACTCGAGGCATCAAGGAACAGCTGCATAAATATGTCCGAGAGTTAGAACAGGCCAATGACGACCTGGAGAGAGCTAAGAGagccaccataACATCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCCATCGAGAGGAACGCTTTTCTGGAGAGTGAACTGGATGAGAAAGAATCTCTCCTTGTGTCTGTGCAGAGACTAAAAGATGAAGCCAGAGACTTGCGGCAAGAGCTTGCAGTGCGAGACACCAGGTCAGAGGTGACGAGAATGTCAGCTCCCAGCTCTCCGACTCCGGATAACGACAAAACAGACTCTGCGGTCCAGGCATCCCTTTCTCTGCCTGCTACACCTCTTAGCAAGAATCTGGACAATGCTTTCACCAGTCAGACAGTTCTGGCCAACGGCTCCACTAACGCAGCCCTCACACCATCTGCTAGAATATCAGCGCTCAATATTGTGGGCGATTTACTGCGCAAAGTTGGGGCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGCCAGGACGGTGAACGGTTTGGACCCCGGTGACGCGACACACATCACAGCCCCACCGCGATCCAACTCTCCATCTGGCCTGGTCCTCAGCGTATAA

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007020 microtubule nucleation biological_process
GO:0007059 chromosome segregation biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:2000574 regulation of microtubule motor activity biological_process
GO:0051303 establishment of chromosome localization biological_process
GO:0007100 mitotic centrosome separation biological_process
GO:0007399 nervous system development biological_process
GO:0051642 centrosome localization biological_process
GO:0060052 neurofilament cytoskeleton organization biological_process
GO:0000776 kinetochore cellular_component
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040115-2 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in immature eye; nervous system; and trigeminal placode. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

Ensembl:

ensembl_id ENSDART00000162115

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010742 lncRNA upstream 967332 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 998506 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010939 lncRNA upstream 1063192 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010741 lncRNA upstream 1082121 25382277 ~ 25389591 (+) True XLOC_004733
TCONS_00010740 lncRNA upstream 1084042 25380137 ~ 25387670 (+) False XLOC_004733
TCONS_00010940 lncRNA downstream 2871 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010942 lncRNA downstream 103162 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 103162 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010943 lncRNA downstream 151645 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 205337 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00009389 mRNA upstream 9968 26435918 ~ 26461744 (+) True XLOC_004742
TCONS_00009388 mRNA upstream 34460 26434478 ~ 26437252 (+) False XLOC_004742
TCONS_00009387 mRNA upstream 523233 25945560 ~ 25948479 (+) True XLOC_004741
TCONS_00009386 mRNA upstream 589768 25845494 ~ 25881944 (+) True XLOC_004740
TCONS_00009385 mRNA upstream 642694 25775814 ~ 25829018 (+) True XLOC_004739
TCONS_00009392 mRNA downstream 5155 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009393 mRNA downstream 26087 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009394 mRNA downstream 52379 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009395 mRNA downstream 122401 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009396 mRNA downstream 135424 26621906 ~ 26726048 (+) False XLOC_004750
TCONS_00009383 other upstream 823469 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 993806 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1219925 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 1906120 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2053372 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 648387 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 670461 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 732511 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 744813 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2459050 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_05946534_05948489.mRNA True 902 mRNA 0.51 6 CI01000063 5946534 ~ 5948532 (+)