RNA id: TCONS_00009409


Basic Information

Item Value
RNA id TCONS_00009409
length 5711
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_004756
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27034594 ~ 27061336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGATTTACCAGTATCGTAGGCCCCTCAGTGGCAGTAGATGGCGGTACTGTTGTCGTATTCAGTACTGACTGTCTTTAGTGAATCAACAGAGGAAGAAAACCCGACAGAAGCACACAATGCAGTTTGACTGCTACTGGTTATCCACCCAGGCTTCGTGTATGCCCCAGCTTtcgaaataaaatgaagaaatccATTTTTGACGATCGGGACGGAAAGCAAGCTTTCATAGGTAGATTTTCACGTTACGCTTGAGAAAAACGCTGCTCCAGCGGCGGACACCGGCGAAATCTCCAGCTTGACCGCACACAGTGGATCTCACAGCGGGCCGCGGAAGGAGGAGCCCAGCCTGCGCTGACGGGGCTGCGCTCAACATCCTTATCGGTGCAACTCCAGCCCGAGGCTTTGGGGCCTGCTGTATATTATTATCGTTTTAAATGGAGGTTCGAACGAAAGCAGAAGCCAGAGGAAAATGGCCCTCTATACAGCGCGAGTGACGAAAGTGACAATGTCTTGACAGAAAGACAGTAAGTGGAATATCTGGAATCTTTCATAACTGCTGTGTTGTTGGATAAAACAGGCCCGGTGATGCCCAGACATGACTATACTCAGACTGCAGTGTGTTCACACCATACAGCCTCCGCTGGACTCCATTAGATTATAAGACAGGAACCCAAAGACACATTTCCATCCGAGGTCCACTGCACTGCTTCTGACGGCGTTGTTCTTCATTCTGTAACAGCTGTAAAATCTCTCAGGCCGGACCGGGGTGTGTTTTAATTTAGTGCCTTCGTACGGACGTTGACATGGACGGTCCTAGTCGGAGCGGAGGCTTCAGGCAGAGCCGTCGCTCCCGATCGCAGCGTGACCGAGAGCGGCGACGGAGGAGAGCGGACCTCACTGAGCACAGGCCCTCGTCGCCATCCTCGGCCTCGGACCAGGAACTTTGCCGAGGAGACTCTCTGCTCCGTGCCGGCGGAGGAGAATGTAGACCCGGCTTCCCCGGGACCAGACACCGGCCTCCGCGGCGGAGGAAGAGAGAGTCGGTGTCTTGCGAGGAGGACATCATTGATGGATTCGCCATAGCCAGCTTCATAAGCCTGGAGGCCTTGGAGATGGACTGTTCCCTCAAGCCTCCAGAGCGATCTGGCATAATGGGAAGAGGAAGTAAAAGGAAGAGGGGCCTAGATGAAAACGGAGGGCCCCTGTCAGAGCCGGAGGAAGGACCTCCTGCTACGTACACCAACAGCTGGGATCAGCGCAGGAAGATTAAGTCAAAACTGAAGAGAAAGGGAGATGCTAAGATATCTGGGAATCACATGGAGACAGGATATATTGCTTCTGACAATATGGAGCCAGCATTCATCGTCTTCACTAGTGAAGCAGTTAACGCCAACTCTGCAAGTGCTGCTGCAGGCAATGGTTGCCCTCTCTTGCCCTCAAACAGCTCAGTACCCCTCCTTTCCGTCACACCTCGGGTCTCTGGCCTGGAGAGGAGTCAGGAGAGGAGTATGGAGCAGCCTTACCCCGAGCCCATCTCTACCTCATCCTCTCTTCCTAGCCTTGCAGCCCATTCCACAGCCTCTGTCTCCAATTTACTTCCTGAGCAGCGCAATGGAAATGGTGGACCCCATCACCGCCATAATGCTAGTTCACCACAGCACAAACACAAGAATTTCCTCCCTTTCCACTTAAAGTCACAATCGATGTACCCAATGGGCAACAACAACAGGAGCAGTACCTCAGGCAAGCCTCCAGCCTCATCATCCTCTTCATCATCGATCAGACCACCTACCCCTGCTACAAGTGTGTCTCTAGGTCGGGGCCCAGGAGGTGTTGGAACAGTAAGACCTTCTTCTCGACCTAGTCCTGGTGCTGTTTTCACACCGTCTCCCAACCTTCCTCCACCACCTCCTCTCATGCAAGTGTCACCCCACCCTTCAACAGATCAGGATCTGATCCTGACAGAATCAAATGGTGCCTCTGCATCTGGAGGGCCGTCTGTGTCGAACTCAAACTCTGGGACATCCAGCAGATCCTCGCAGGCCCAGACATCCATCCCTACAATGGCCTACCAGTTCCATCACCACAATCACCAGCACCAGCACACTCATACTCACCAACACTTCCTACATCCTACAGCTGCACCACCACCACAACTGtttgaaaAGTATCCAGGCAAGATAGATGGTCTGTTTCGACACCCATTTTTTCCTCAGTACCCACCATCTGTGCCTGGAATACAGCCCGTTCTTCCGTCCACAGGACCTTTCAGTTCATTGCATGGAGCTTTTCAGCCCAAGGGAGCTGCTCCTGAGATGACTTCAGGTTTGGGAGTTGTACCGCCCCATCTGCAACCTAAAGCTAGGCTAACAGATTCATTTGCACCACCACCAAAAGTCAGTAATAAACCTGGAAAATGGTGTGCTATGCATGTTCGTGTGGCTTGGATGATTCTAAGGCATCaagaaaaagtcaagCTTATGCACGCTGACCCACAAAAGCTGGACTTGCGTAATGAACTATTGCCACGACTACCTGGCCCTGGTATTGGTGGACTAGGAGGTCTCGGACCACTTGGTGGTCCCCTTGGCCCAGCTCATGATCTTACAAGACCAGGAGGCCTGTTTGCAGCCACTGGTGGAGTCAATCCGTCCTCCACACCATTCATGCCTCCATCAACGCCCCACTCTTCTTTCCTCACCCCAGCAGCACATCTGGACCCATATGTTCATTCACCCCACTTCTCCTCTCTGGGAGCCCTGGGTTCTGGTGCCTTTGGAGGCCTAGGCAGCCCCACGATAGCTGCCAGTGTTTTTGGGCATAAGACTGAGCCCTCTGCAAGTGCTGTTGGTGGACTGGGCAACCCTCATGATCCATGGAATCGTCTGCATGTTCCTCCTGCCTCTTTTCCTTCTGGATCATCTTGGGCCAAAGGCCCTGAGAAAAGAGAAGATAGAGGGAAGGAAGTTGAGAGAAGAGAACTGACTCATATAAAGGATGAAAAGGACAGAGACAGCATCTTGTATGGACGCCAACCAGTGCGAATGTCACCTGGTGTCCCATCCCTCAAGCACCGCAGCAGCACCCCAAGTTCACATATAAATGGCTTAGGATCACTAACCGGAAGTGGGGTTCAGTCTGATGGTCAAAGCAGAGAGCGAGAACGGGAACGCGAAAGAGAGTCCGACAAGAGACACCATTCTGCATCCAGGCCTCCAGCGTCTGCTTCCTCCACAGCTCCAGACAGGCCTCGGTCTTCAACATCATCTATCCTCACAACTTCACCTTCTAATGTTCCTTTAGCCACCTCTCCTCTGGATCTGTTTCACCGACAGCCATCACACACACTCGGCACAGAATCCAGCCACTCTTCTCAAAGAGAGAACAACGGTCCAGCCTCTTCTTCCTCTTCTAGTTCACTTCCTGTCAAGAAACCTGATCGAACCACAACTCCAGTATCCAAACCTGCACTTGGTCTTGCCTCTGGGTTGCTTGTAGCCCAAGTCAAGGTCAAAGAAGAACGAAAAGAGGAGCCTGAGCCAGTGCCCATCTCTTACACACATCCTGCTGTACCTTCACATAACTTTGAAAGGCCCAGTAGTCGGCACCCACACCACCCATCCACCCCTTCTTCAACCCTTTCTTTGACACCTACACCTGGCGTGCCTCTTCCTCCTCCAACTCCACACCCTCCCCATCATCCTCTATCTCTTTTAGATCGTTCACGGGCTATGGACTATGGCACAGCTGGACTGGTATTAGGTGCTGCAACAGATCGCTTCGCGCCGCATCCACATGGTCCTCCACAAGGTCATTCCCAACCTACTCCCAGCTTTCCCTGGGAGACTTGGAGGGATCTGGCCAtccatcaacaacaacaacaacaacgcagAGAATTATTGACTCTGAGGTCTGATCCCCACCTTGCACTTCGCTCTGAACCACACTATAGATTACAGCGCTACTTTGATGCGGAAAGAGCTGTAGTAGCAGCAGCTGTGGCAAACAGCCCGCACCATCCACCAGTACCTACCTCTACATCCGCTGCTTCGGCTTCAGTGGGCAGGCCAGATTTTGGGTTGATTTCCCACCAGTTTGAAGATGAACGCGCTCATATGTTGCGGGATGATAGAGTACGGTATTTCGGGATGCACCCACACCTGGCCGCACCTCATCTTTCTAGCCCATCTCATGCTGCCCACCTAGAACAGCTTCATGCTGGGCTACTATCTCACTCTCATCTCCATCCTGCTGGAGCCGCCGCACAAGCATCACATCACCCAGATTTCTACTCAAGACTTGGGCAtctgcattcacacccacacgTACCTAATGGCATTCTAACCAAGACCCCAAATCTAGTCGGGGCATTGTCAATTGGTGCACCACCCCGTCTCATTCCATCTGTGAACAGATCTGCTACCCCACCCCGTGGACCTAGACTTGGTGGGGCAGGAGACTTAACCCTTTTTGCCACACATAAAGACAGCGAGTCCAGATAGTAGTAGGTAAAGCTTGAGGAGCTTCCTGAACTGTGGAAGAAATAGCTCCTCACGTGGCAAGGTTCTGCAGGATACTCGAAAAGAGCTTAGCTTCAATGACCATACACAAGTGTTGAAACAATTTGGGGAGAGAGCATACTTCCCAGGGCTGTTTGATATATTTATCCACTGTGGTTATGTTGGTGCAATTAAGGTACTCTCTTGCTGTGCCCTGATTTTTATGTAGGGGTTTTCTTTACAAGAGGCCTGTGGATGTTCTAAGACTATTCATTACTGCTAATAATATGAAGACAGATTGTGTTGAGTGATGGATCAAAAATTGTGAACCTGTTTGTCCTGGTGAACTCAAGAGAAATCCTACTGTAGAGTTATGGTCCTCAGCTTTGCTTTTAAAGAAGGAGAAATTGGACTCTGTCTGAAGTAGTCAAGTACTTCATTGTCTGATTCAGCACTGTTGGGAAATGTATGAATTAAAGGAAACACACGGTCCACTATCTGTTTTAAATAATCAAGTCATCCATTAGGTAACTTCCGTGAACATCAGAATGAACTtcttaagatttattttattctttaaaaaagttattatgaACTGTACATCTTGTtggataatattttaaaatttaaagggaAAGAACTGTCTCCCATTCATTAGTCTGACTCTACCGAAGAGCTGGGCTAGAATATAGTAGAATAGTGACATTTCTtttgtaataattattgttaacattaattaccttccataataaatatattcactGTTTATGTTATAATGTCATGTTTCAGTTCTCACCAAATGCACTCAGTTGTTTAAATGAGTCAGTGATGATTATTGTCCAGCCAAGCACTACTATTGCTCAAAAATACTGATTATGTACTGAGGATGTGTCAAAGGCAGCCTCTACAGTTCAGAGAATTGAACATCTTCATACTTTgggagagagagggtgtgtgtttgttatttCTGTTTTCCATAGTTCAACAACCATCATCCGAACTCAGTGGCACTAAGCATCTGTCAACTGGACCCAAGGAGTGCACGTCCCGTACTTGCAgctaaacaatatgattagaaaGACTCTTGTCCAAAGATATGGGACATTCTGGATTAATTATTTGAGTAAAacagttttatacattttaaatatgttcccTCTCCCCCTTGAAAAGAAAGCCACAAagattaattattaaacaaatggTTGGT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-111207-1 Is expressed in Kupffer's vesicle; immature eye; nervous system; and somite. Orthologous to human FBRS (fibrosin).

Ensembl:

ensembl_id ENSDART00000153054

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009402 lncRNA upstream 138144 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010944 lncRNA upstream 200568 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00010943 lncRNA upstream 308979 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA upstream 342709 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010941 lncRNA upstream 441462 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009425 lncRNA downstream 152424 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 170408 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1315694 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00010744 lncRNA downstream 1556365 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009458 lncRNA downstream 1872188 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00009404 mRNA upstream 5952 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009403 mRNA upstream 5952 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009405 mRNA upstream 7743 27022517 ~ 27027017 (+) False XLOC_004755
TCONS_00009406 mRNA upstream 8387 27024676 ~ 27026373 (+) True XLOC_004755
TCONS_00009401 mRNA upstream 69762 26877381 ~ 26964998 (+) True XLOC_004753
TCONS_00009411 mRNA downstream 384 27061720 ~ 27092286 (+) False XLOC_004757
TCONS_00009412 mRNA downstream 7189 27068525 ~ 27076158 (+) True XLOC_004757
TCONS_00009413 mRNA downstream 35499 27096835 ~ 27115412 (+) False XLOC_004758
TCONS_00009414 mRNA downstream 38607 27099943 ~ 27114838 (+) False XLOC_004758
TCONS_00009415 mRNA downstream 52863 27114199 ~ 27114734 (+) True XLOC_004758
TCONS_00009383 other upstream 1386517 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1556854 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1782973 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2469168 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2616420 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 73533 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 95607 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 157657 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 169959 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 1884196 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU301878 True 2745 TUCP 0.46 2 CI01000063 6288158 ~ 6290946 (-)
mexican tetra (Astyanax mexicanus) TU301878 True 292 lncRNA 0.43 1 NC_035921.1 38821826 ~ 38822117 (-)