RNA id: TCONS_00009413


Basic Information

Item Value
RNA id TCONS_00009413
length 3102
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_004758
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27096835 ~ 27115412 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGATTATATGCCAGTACCCAGACGACAGCGCGCAGTGGGGAGGATGATAGCCTTCTACTGGACTGCTAAAGCAAAGCAGTGTGAACTGAAGAATTTTCCATCTGGGGAAACCCTGCTGTCCTGCTTCTGAAGAGATCAGAATGGGGACACCAGCGGAGCGCTCAGTGAGTGAAGTGTGCCGGTGTGAGCCTGATCCAGGGCTGGAGGGAGAAGGCTGGGGAAGTGACACCCACGCGGAGCCCTCCAACACTCCAATCCCACTGCCAGTAGCCAAcaagaagaaaaagagaaagaagaaACTGTGGATAAATCTCACCAACTGCAAATATGAGAGTGtGCGTCGTGCTGCTCGCAGATATGGGATACGAGAGGCAGCAGAGGGAGAAGACTGGACTCTATACTGGACCGACTGTTCAGTCTCATTAGACAGAGTCATGGATATGAAGCGTTACCAGAAAATCAACCATTTTCCTGGTATgaatgaaatctgcaggaaggacTTGCTAGCACGGAATATGAACCGcatgctaaaactcttcccaaaGGAGTACAACATTTTTCCTCGCACATGGTGCCTTCCTGCCGATTATAGTGACTTCCAAGCCTACACCAGAGCCAAAAAGCACAAAACATTTATCTGCAAGCCAGACTCAGGTTGCCAAGGTCGTGGTATTTATCTTACCAAGTCTAACAAGGATATTCGGCCAGGAGAACACATGATTTGCCAGGTGTACATGTCCAAGCCGTTCATCATTGATGGGTTCAAGTTTGACCTGCGCATTTATGTGCTGGTGACCAGCTGTGACCCCTTCCGTGTCTTCATGTATGATGAGGGACTCGTCCGTTTTTGCACCACACATTATACTGAGCCCACTGTCAGCAACTTGGAGGATGTTTGCATGCACTTAACTAACTATGCCATCAACAAGCATAGTGAAAACTTTGTACGCGATGAAGATACTGGCAGCAAACGGAAACTCTCCAGCTTCAAGAAGCACATGGAAGACATGAGTTATGACACTGAAAAGTTGTGGACGGATATTGAGGACGTGATCATTAAAACACTAATATCAGCGCACCCCATTCTCAAACACAACTACCAAACCTGCTTTCCCAATCACGCATCTGGCAGCGCTTGCTTTGAGATCCTGGGATTTGATGTCTTACTGGATCGTCGACTGAAACCTTGGCTTCTTGAGGTCAACCATTCCCCCAGCTTCACCACAGACTCCCGCTTAGACCGGGAGGTGAAGGACAGCCTGCTGTATGACACTTTGGTGCTGATTAATCTGGGAGCCTGTGACCGCAGGAAGATCACAGAGGAGGAGAAGCGCCGTGTAAAAGAGAGACTACAGCAGAACCGCTCGAGAGAGGCCAGAAATGAGGAGCTTCGTCAGTCTCAAGCTGCAAGTATGGAGCAGATGCAGAAATATGAAGCAAAACACATGGGTGGTTTCCGGCGAATTTTCCCTCGTGACGGAGGAGAGAAATATGAAAAGTATTTCCAACACAGCAGCTCTCTTTTCCAGGAAACTGCAGCCTCTAAAGCCAGAGAGGAGTGTGCCAGGCAGCAGCTGCAGGAGTTGCGTCTGAAGCAAGAGCAGAAAGAGCGAGATAAGAAAGGATCACGTAAACAGGATCTTCAGGGTGAATCTGCAGGAGAAAAAGTAAAACCAAGAAAAAGTCAACCCCCACATAAAACTTCAAACTCATTACCAGCAATGCTTGAGCTGTCCAGCGTGAGGGAAGAGACACCTGTTTCTCTTGAGCGGATTGAGAAAGAGGAGGCCGAGAGAGTCCGAGAGCTTCAGCAGCGAGAGACTCTCCTGTTAAACATGGGCGTGGTGAATCAGGTCCGCCAGCTTCTTCAAAGTGCCAATCATCTTACTCAGTGTATCAACCACTCGCATGAACAAGCCAGCTTTCCTCCACACTGCAGACACGACCACAAGTTGGACACGCTTGCAGAGATATCGTGGAGGCAGAAGAACATCTACTCTACAATGCAACATCAAATTCTTGCCAGAAACGGGCCCAGTTTGCCGAATGTTCATTCCCAAACACTGCAAAACCGAAAACCCTGGCCCTCTCTAGAACACGGTCTCCTCCAGCCCGTCCAGACTCAAGCAGCAGCTCTCAAACACTATGGACTGGAAGAGATGGTAGCGTCAAATGCAGAGGAGCAGGCTAATCTAATTAAGGCCACTAGTGCACAACAGATACCTTTAACAATCAATGGGTCTTTCATTTGGCGTCAGGGCAGTCTGAGCTCCTCTCTGGCCGAGTCGAGAGCAAGAGCCACAATGTTAGCCATGCCTCCTCTTGGTCCAGGACGACTACATCGTCCCACCATTTTTCATGACCCCAACTCTCTCTTTATCATCTCTACCCCGGCTCCTCTTGTCCCGAGACCACACCTCTCGCACGACCTCCGAAAAGCTCCTCGCAGAGTCCTTCCACATGAGCACAGCCTCTGACCAGGGATGACACAAGTCATTCAGTAAGCGAATAAAGACTCAAGGAAGGTGTTTTGTAATGAGTGAAGAGTTGAAGGTGAGAAGGTGCGCATTCACTACCTGTCTTCCAGactgaaaatgtcaaattttTGTCTTCACTAATTTTAATTTGAATgccatttttcctttttttccctgTAATTTGTTACAATTGCAGTCAGTCGTTTAGCCTATTTTGAAGAGTGCAGAGGGCTGGTGCCTGCTGCTACCTTAAATTGTAGGTATTATCGGATTAAAACAAGCCATAAGttcataattttaaattaaatgaatgtgaATATCCTTTGTTTAACACAGTCTTGTAAGCTATTTCATGTCATTCTAAGCCAATtagtataaataaacattttaatgaatgttttttgtttattagaaTGCTGATCTAAAGGAATAGGTCAAATATTTCAATTCATGATGGGTCTTGTCCTGCCAGTATGACTTCTTAGAACATATATGAAAATAAACAGGGTACAATATTGCCCATTTATTCTCAGAAACAGAAATTTCTATGCAATTTGTGCTGTAAAACAGAGTTTGTACATTGtttaaatgctgggttgtttcaataaaaatatggtaaaata

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0030030 cell projection organization biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0070739 protein-glutamic acid ligase activity molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080107-1 Enables tubulin-glutamic acid ligase activity. Involved in protein polyglutamylation. Acts upstream of or within axoneme assembly and cilium movement. Located in cilium. Is expressed in lateral line; peripheral olfactory organ; and pronephros. Orthologous to several human genes including TTLL6 (tubulin tyrosine ligase like 6).

Ensembl:

ensembl_id ENSDART00000149475

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009402 lncRNA upstream 200219 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010944 lncRNA upstream 262643 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00010943 lncRNA upstream 371054 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA upstream 404784 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010941 lncRNA upstream 503537 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009425 lncRNA downstream 98348 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 116332 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1261618 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00010744 lncRNA downstream 1502289 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009458 lncRNA downstream 1818112 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00009411 mRNA upstream 4549 27061720 ~ 27092286 (+) False XLOC_004757
TCONS_00009412 mRNA upstream 20677 27068525 ~ 27076158 (+) True XLOC_004757
TCONS_00009409 mRNA upstream 35499 27034760 ~ 27061336 (+) False XLOC_004756
TCONS_00009408 mRNA upstream 36029 27034760 ~ 27060806 (+) False XLOC_004756
TCONS_00009407 mRNA upstream 36706 27034594 ~ 27060129 (+) False XLOC_004756
TCONS_00009416 mRNA downstream 2197 27117609 ~ 27120171 (+) True XLOC_004759
TCONS_00009417 mRNA downstream 11727 27127139 ~ 27128768 (+) True XLOC_004760
TCONS_00009418 mRNA downstream 14247 27129659 ~ 27131735 (+) True XLOC_004761
TCONS_00009420 mRNA downstream 25728 27141140 ~ 27142834 (+) True XLOC_004763
TCONS_00009422 mRNA downstream 41531 27156943 ~ 27206904 (+) False XLOC_004764
TCONS_00009383 other upstream 1448592 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1618929 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1845048 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2531243 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2678495 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 19457 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 41531 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 103581 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 115883 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 1830120 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

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