CI01000063_06347057_06348343 (HOXB5B)


Basic Information

Item Value
gene id CI01000063_06347057_06348343
gene name HOXB5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6346637 ~ 6349040 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06347057_06348343.mRNA
TTATAAATACGACTTACTGTTAGTGTTCCAATAGCATATAGTGTTGCAAAATTATGCAGCAAAAAGGCTTTCCGAAATGGGCAGGTGTTTGGTCATTTTACAGTTCTTCCAGTAGGTGACGCCCTCCGCTAACGTGGGATGTGGCGCTCGATGGGGAGGCACCATTGAGTTGAACCTAACGATCATCATTTCGTCATCATTTGTAACCATAGAGCATGAATTACCTCTTGAAGTCATCAGAGAGAATTTACGACTGGTCAACAAAGGCACGTGATGCCCTAACGCTCTCCCATATTTGGCCGCATACATGGCAAAAACGAAGTACAGTGCATTGCTATAATTCATTATTACATCATAAATTGTGCGGCGCTGGATTTTAACGACCAAGATCTACAAATCAAGACATTTTAAAACATCCAAATGAGCTCTTATTTTCTAAACTCGTTCTCAGGGCGCTATCCAAATGGGTCTGACTATCAGTTACTAAATTATGGTACTAACGGCGCTATGAACGCTTCTTACAGGGACTCCACCAGCATGCATTCCGGGTCTTTCGGTTACAACTACAATGGAATAGACCTTAGTGTAAATCGTCCCAACAATGGCCATTTCGGTGCAGTTGGAGATAATTCTCGCTCTTTCCAAAATCCGGGTCAGGAGACCCGGTACAGACAGTCGAGCTGCTCGCTCTCGTCTCCAGATCCCATGTCTTGTGCCACCAGCGAGAGTCTGGAATTGAAGGGTTCATCTCCTCCATCTGATCAGAGCACACCAACCGGCAACAGCAGACTCACCAACAGCAACAATCTCACCAGCAGCAATAGCACACATTTTGCGGACACAGACGAGACCAATGTCTCGTCCGAGACCGAGGAAGGAGCACAGACCACCACCAACACACGTACGCAGAAGCAAGAATCTGTGGCGACCTCGACTACAACACCTAACGACGGTCAAACTCCACAGATATTCCCATGGATGAGGAAGCTGCACATTAGCCATGATATGACTGGACCTGATGGAAAACGGGCTCGAACAGCTTACACTCGCTACCAGACGCTCGAGCTGGAGAAAGAGTTCCATTTCAATAGATACCTAACACGCAGGAGGAGAATAGAGATAGCTCACGCTCTCTGCCTCTCAGAGAGGCAAATCAAAATCTGGTTCCAAAATCGCAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGCATGAGTCTCGCTACGGCGGGGAGCGCATTTCAAAATTGAGCATTTCACGTCACATTAATTGGAAAATTCGACTACTGTTACAGCGCTGCACCTTTCAGCTTGTTGATATCACCTGACGACGTGTGATTTCCCCCGTGTAACTCAAAATTGTCAGCTCTTGAATATTGTTATCACATATGCTAAACTAGTTACAGTTGCCATAAAATGAGTGTGAATGTCAAGTGTGTCAAGTTTATACATTCGTGGAGGAAAGCATGTTCCATGTGAGCTATTCGTGCAACGTATTCTAGACCTGTTACAAGAATTATGTACAGTACAACTCGCACTACCTAACTATCTTAAGTGATAGTGTAAAAAAAGAGAAACTTTTGTTGTATCCTTGAACTTGTATTGAAACGTCATGTATTATTCACGCAACATGCTATATTCTTGTTATGTGCCGGGCTTTTTGATTTCTCGTAGATGATACCTGCATCGCGAGAAAAATAATCTTTTCGCACTTACATTTGTGTACTTAGGCTGCAGCACAAGATTACTTTGGGCTCGTAAGATGTCCAATGAAGAATGTCTTTATACAGTAGTGACCAATATGTTATTTGTAGTGCACAACGTGAGTTATGAACGTTATGTGTTAAAAGTTGGAGAAAAAATGTTTTGTCATTGACATGTTGATGGTATCTCTGCCATTTTTTTGTATTTGTGTCTAAACTGAAAATGAGTTGATCCAAAAAGAAAA

Function

symbol description
hoxb5b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; cardioblast differentiation; and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; otic vesicle; pharyngeal arch; and pronephric duct. Orthologous to human HOXB5 (homeobox B5).

NR:

description
homeobox protein

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06347057_06348343.mRNA True 1948 mRNA 0.43 2 6346637 6349040

Neighbor

gene id symbol gene type direction distance location
CI01000063_06344484_06345613 HOXB6B coding upstream 511 6344434 ~ 6346126 (+)
CI01000063_06335618_06338138 HOXB8B coding upstream 8354 6335618 ~ 6338283 (+)
CI01000063_06320398_06332096 TTLL6 coding upstream 14505 6320398 ~ 6332132 (+)
CI01000063_06293923_06317422 SRCAP coding upstream 27564 6293923 ~ 6319073 (+)
CI01000063_06276811_06289690 FBRS coding upstream 56905 6276052 ~ 6289732 (+)
CI01000063_06352595_06356492 NA coding downstream 3319 6352359 ~ 6357553 (+)
CI01000063_06358644_06359789 HOXB1B coding downstream 9279 6358319 ~ 6360115 (+)
CI01000063_06371168_06383580 NA coding downstream 21085 6370125 ~ 6383983 (+)
CI01000063_06384263_06390553 NA coding downstream 35069 6384109 ~ 6390590 (+)
CI01000063_06408168_06418415 NBR1 coding downstream 58722 6407762 ~ 6419326 (+)
G265463 NA non-coding upstream 7770 6338652 ~ 6338867 (+)
G265460 NA non-coding upstream 23013 6323277 ~ 6323624 (+)
G265334 NA non-coding upstream 72754 6270464 ~ 6273883 (+)
G265457 NA non-coding upstream 87370 6259057 ~ 6259267 (+)
G265456 NA non-coding upstream 87779 6258570 ~ 6258858 (+)
G266176 NA non-coding downstream 302777 6651817 ~ 6653969 (+)
G266294 NA non-coding downstream 672265 7021305 ~ 7021509 (+)
G266299 NA non-coding downstream 677007 7026047 ~ 7026289 (+)
CI01000063_07120937_07121851 CDK5R1B, CDK5R1 non-coding downstream 744237 7120602 ~ 7125013 (+)
G265391 NA other upstream 427608 5913783 ~ 5919029 (+)
G262436 NA other upstream 3632120 2713615 ~ 2714517 (+)
G262423 NA other upstream 4103672 2241408 ~ 2242965 (+)
G262194 NA other upstream 5201630 1139352 ~ 1145007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004761 hoxb5b coding NC_007123.7 CM002896.2 27129659 ~ 27131735 (+)