CI01000063_06408168_06418415 (NBR1)


Basic Information

Item Value
gene id CI01000063_06408168_06418415
gene name NBR1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6407762 ~ 6419326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06408168_06418415.mRNA
AAATATAGTGGTCGCGTCGACGTAAGAATGTAATCAGCAGCGCAATTATTGCTATAACGGTATCTATGTATTCATATCTATGTTCGCGGCGACTTCAAAAGACGTATGTGCATGCGTGCGTCATATTTTCGTCTGTAAAAATATTGTTTATTTAAATTACAATATTAACTAATAAAACGACCTATTTAAATATGTTTGATGATAATATTCGGTAATAATAATAAAAAATATTTAGTTAGGACCAGGACATGAGATACTTCCTGTGACGTGTGTTGGGGGCGTGTACGAATCTAGCGATGTAAACAAGAACGCAAAAGACAAGTCTCACAGTGTTGACACCACCACGGGCATTTTTAGAGCATCATATCCCCGCATCAAACGTATCAAGTGACTCTGGCTCACAGTCATGAACCTCCCCGTCACTGTCAAAGTGAACTTTAGGGGCAACGTGAAGAAATTTCCAGTCTTGGACACGAACAAAGCACAGTGGGAGACTGTGGAGGCCTGGATTAAAACTACATTCGGCTTGTGCCATTTTCAAGTGAAATATTTTGACGAGGACAACGAGGAGAGTGCATTTAAGCAAGCCAATCAGCTACACATGAATGTCTATAAGATGAAGGGTCAGGCAGAGGGTGGTGCAGTGAAGCCAGAGCTGAAGGAACTAAAAATAGATCCTAGACCAGCTCCACCGTATCGAGCAAGGGTCAAGATGGCAGACAAGGAGACCCAGGTGACCCCCGAGCGGGACACGGCTGTGGCCAAAGAAAACAAAGGGATGAAAACTGAGGAGGAAGCAGTCCCAGCATGGTTCAAATCCTACATGGACAGGTTCAAAGATCAAGTGGTAAGGGAGGTGGTGGACAGGATGTGCAGTGAGTTTTCTGGCCAGTGTTGCACACACAGAGCCTTGGATCCTCCCGCAGAGGAGCCAAGCACCTCCGGCACTCAGAAAGCTACAAGCTCCACCACGCTAAGGGCCTCTAGTTCAACTCCAAATTGCAGTAGCTGCAAAGGACCAGCCACTGGGGGAGGATATCAGTGCAGGTTTCTGAGACGGGGTGACAGGACTGTGCGAAAGGCGGAGAGGCAGCGGCTGAAAGCTGAGCGGAGGCAGCTGAAGGCCGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGCTTCAAGAAAAAGACAGACGCTGAAACAAAGCTGTTCTGATGATCCTCTGTGCACTCAAACCAGGGGTCCCAAGGTCTCCTGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAAGTACTGGAAGATGAGGAACACTGGCAACATCAGCTGGACTTCGGATACCAAGTTGAAGTTTATGTGGGGCAACCTGACCCTGGGGGCACGGGAGCAAAAAGAGGTGGCAGTGCCCTTTCTGCAGCCAGGTCAGGTCGGTGTGGTGAGTGTGGCATTTGTGGCGCCCCTGCTAGAGGGCACCTACACGTCTCACTGGCGCCTGGCACACTGTGGAGTGCAATTTGGGCCCAGAGTGTGGTGTAGCATTGTAGTGGTGCCAAGCGCAGGGAAGAAACTCAGTTCCCACTGCAGCAAATCACTGAGGACCGATCTTTGTCTGATGGGGAAAGATGGCATGTTCTGGTCAGGCACCAGAGATTGTGAAGTGTCTACCAGCTCCCGTAGAGAATACTACATCCCCTCTGTGGACTTACTGACAGCACAGGATCTGTTGTCCTTTGAGTTGCTGGATATAAACATTGTGCAAGAATTGGAGAAAGTCCCAGCTAACACTCCAGTTGATATGACCCCCTGTGCGTCTCCACCTCTTCATCATGGACCCTTGTTTGGAAAGCACAGAACGGGACTAAGCAAAGTCGAGGCTGGATGTTCAGGCAGGAAAAAACCTCAAGTGTTGCAGCCTCAGAGACAGAATGAGCTTCTGGACGTTCCAGGGAATGAGGACGGAGATGAAGACATCAGTGGGACTCAGTTTGTGTGCGAGACTGTGATTCGTTCTCTCACTCTCGAGGAGGAACCAGAACGCAAACCTCAACGCAGGACTCGGCCTAACCTGAGGAGGCATGACATTCATAACCCTGCTCGCTTTCAGGAGAGATCGTTACAGGTGAAGAATGACAGACCTTTGCCAATCATAAACAGGCCTGAGGCTCCAGCACCTGTGCCAAAGCCAGTCATAACAGAGGAACCGGTCATGCCAGAGGCATTGATTGGCTCAAATGAAAACCTCTACACCGATCCAGCTGCACAGGAGGAGAATGAAGAGGAAGTGGAACACAAGGGACATGAAAATGATCAAGATAAAGAGGAAGAAGCAGGAGAGTGGGATGAGGTGAGCAGCCAGGTGTCCTCTGCCTCATCTGAGGACTACATTGTCATCCTGCCTGACTGCTTCGATACTTCCAGGCCCCTGGGAGAATCGATGTATAGCTCAGCAATGTCCCAGCCTGCAGTCCCTCTTGTTAACGAGCCAGAAGCACCGCAAATCCCGAGCACGGCTGAAGGAGAGAACGAGGAGCCCACCCCTGTTCCAGCCCTTCAAAACAGCTTGAACCGGATGCTGTGCACTTCTCAGATACTGGACACTCCCCCTCTGATTCCAGAGATGGACCAGGGGCCTCTGAAGAGAATGCATCATGCCAATCTGAGGATGACTCAAGTGCGGCCTGCCGTTGACCCAGCCTGCGAGGATGCCTCCATGATGGCTGTTTTACAGGAGATGGGTTTCAGCAACCAGCCGCTCAATCAGAGGTTGCTGAGGAAGCATCACTACAGTTTGCTTGATGTAGTCAATGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGTGGCAACCTCAGTGAAGTATAAGAATTGTAAATGATTTCATCGTGTTGCAGTATTTTGGTGAAATGCCTCCGATGTTCTTTTCTTAGAGAAATAGTTTGGATTCTCGAAAAAAGAGAACTATATCACTATAACTGACCATAGCTGCAATGATGCAATTACTTGATTGTACAAATTTAGTTTAGGACATTATGAATGGGGAAACAGCATAAGGTTTATTAAGCAGTCTTAATGCTATCTTTATTCAGTGCGTTTGCCCTACTAACACATATAGACTGCTGTTAGGTAGGCTTCAGGTATCTTTTGTACTGCTTGATTAGATAAGATGACTAATTTGAGACAATACCCAGAGGGTTTCTGTTTGTTTGAGCACTTTTGCCTCTCAGAGGAAAGATATAAAAAGAAAAGCTTGTGTTGATTTTGTTATTTGTCACAGTGACCTCTATATTTGTATATCTTACTTTAAATCACACTAATTCATGTCACACTAAGGTGTTGGGCTGCCGGACATATAGGAATGTGCAATGAGTTTTTCAGTCACGCTTAACTCAACCAGTGATTGATTGGTCAAAGTTTTTGCTAGGCACCAATTTTGGTCATATTTGTCATTTTCATGTGCAATGTATTACTATGAACTGAAGGCTTATCAACATGGCTTTTTGTGTCCAGCACAGTGA
>TU301143
CTTTAACATAGTATCTTTGGTTTGGTTCACTTTCAGCGGCCTGCCGTTGACCCAGCCTGCGAGGATGCCTCCATGATGGCTGTTTTACAGGAGATGGGTTTCAGCAACCAGCCGCTCAATCAGAGGTTGCTGAGGAAGCATCACTACAGTTTGCTTGATGTAGTCAATGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGTGGCAACCTCAGTGAAGTATAAGAATTGTAAATGATTTCATCGTGTTGCAGTATTTTGGTGAAATGCCTCCGATGTTCTTTTCTTAGAGAAATAGTTTGGATTCTCGAAAAAAGAGAACTATATCACTATAACTGACCATAGCTGCAATGATGCAATTACTTGATTGTACAAATTTAGTTTAGGACATTATGAATGGGGAAACAGCATAAGGTTTATTAAGCAGTCTTAATGCTATCTTTATTCAGTGCGTTTGCCCTACTAACACATATAGACTGCTGTTAGGTAGGCTTCAGGTATCTTTTGTACTGCTTGATTAGATAAGATGACTAATTTGAGACAATACCCAGAGGGTTTCTGTTTGTTTGAGCACTTTTGCCTCTCAGAGGAAAGATATAAAAAGAAAAGCTTGTGTTGATTTTGTTATTTGTCACAGTGACCTCTATATTTGTATATCTTACTTTAAATCACACTAATTCATGTCACACTAAGGTGTTGGGCTGCCGGACATATAGGAATGTGCAATGAGTTTTTCAGTCACGCTTAACTCAACCAGTGATTGATTGGTCAAAGTTTTTGCTAGGCACCAATTTTGGTCATATTTGTCATTTTCATGTGCAATGTATTACTATGAACTGAAGGCTTATCAACATGGCTTTTTGTGTCCAGCACAGTGAATAAAAAACATTCCATTATCG
>TU301141
CAGCGGCCTGCCGTTGACCCAGCCTGCGAGGATGCCTCCATGATGGCTGTTTTACAGGAGATGGGTTTCAGCAACCAGCCGCTCAATCAGAGGTTGCTGAGGAAGCATCACTACAGTTTGCTTGATGTAGTCAATGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGTGGCAACCTCAGTGAAGTATAAGAATTGTAAATGATTTCATCGTGTTGCAGTATTTTGGTGAAATGCCTCCGATGTTCTTTTCTTAGAGAAATAGTTTGGATTCTCGAAAAAAGAGAACTATATCACTATAACTGACCATAGCTGCAATGATGCAATTACTTGATTGTACAAATTTAGTTTAGGACATTATGAATGGGGAAACAGCATAAGGTTTATTAAGCAGTCTTAATGCTATCTTTATTCAGTGCGTTTGCCCTACTAACACATATAGACTGCTGTTAGGTAGGCTTCAGGTATCTTTTGTACTGCTTGATTAGATAAGATGACTAATTTGAGACAATACCCAGAGGGTTTCTGTTTGTTTGAGCACTTTTGCCTCTCAGAGGAAAGATATAAAAAGAAAAGCTTGTGTTGATTTTGTTATTTGTCACAGTGACCTCTATATTTGTATATCTTACTTTAAATCACACTAATTCATGTCACACTAAGGTGTTGGGCTGCCGGACATATAGGAATGTGCAATGAGTTTTTCAGTCACGCTTAACTCAACCAGTGATTGATTGGTCAAAGTTTTTGCTAGGCACCAATTTTGGTCATATTTGTCATTTTCATGTGCAATGTATTACTATGAACTGAAGGCTTATCAACATGGCTTTTTGTGTCCAGCACAGTGAATAAAAAACATTCCATTATCG
>TU301142
CAGCGGCCTGCCGTTGACCCAGCCTGCGAGGATGCCTCCATGATGGCTGTTTTACAGGAGATGGGTTTCAGCAACCAGCCGCTCAATCAGAGGTTGCTGAGGAAGCATCACTACAGTTTGCTTGATGTAGTCAATGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGTGGCAACCTCAGTGAAGTATAAGAATTGTAAATGATTTCATCGTGTTGCAGTATTTTGGTGAAATGCCTCCGATGTTCTTTTCTTAGAGAAATAGTTTGGATTCTCGAAAAAAGAGAACTATATCACTATAACTGACCATAGCTGCAATGATGCAATTACTTGATTGTACAAATTTAGTTTAGGACATTATGAATGGGGAAACAGCATAAGGTTTATTAAGCAGTCTTAATGCTATCTTTATTCAGTGCGTTTGCCCTACTAACACATATAGACTGCTGTTAGGTAGGCTTCAGGTATCTTTTGTACTGCTTGATTAGATAAGATGACTAATTTGAGACAATACCCAGAGGGTTTCTGTTTGTTTGAGCACTTTTGCCTCTCAGAGGAAAGATATAAAAAGAAAAGCTTGTGTTGATTTTGTTATTTGTCACAGTGACCTCTATATTTGTATATCTTACTTTAAATCACACTAATTCATGTCACACTAAGGTGTTGGGCTGCCGGACATATAGGAATGTGCAATGAGTTTTTCAGTCACGCTTAACTCAACCAGTGATTGATTGGTCAAAGTTTTTGCTAGGCACCAATTTTGGTCATATTTGTCATTTTCATGTGCAATGTATTACTATGAACTGAAGGCTTATCAACATGGCTTTTTGTGTCCAGCACAGTGAATAAAAAACATTCCATTATCGTTATCAGTGTGTTTGAGTTTTATTCACATTGCATAATCATGAGTCTTCTTGCTATTGTTTAAATCACACCAGTCAGCAAAACTATGTTTGGTTAATGTACACACAGCTGAAGTGATGAAACAATGGAATGTTCTAAAGGTTAAAATAGTAATGGCTTTAGTCAGCTTCCTCCTTCAAGGCAGGAACTGAGTACAGATTCCCCAGTC

Function

symbol description
nbr1 Enables ubiquitin binding activity. Involved in macroautophagy. Located in cytosol and nuclear body. Part of receptor complex. Colocalizes with mitochondrion.

GO:

id name namespace
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06408168_06418415.mRNA False 3586 mRNA 0.47 16 6407762 6419099
TU301143 False 921 lncRNA 0.39 1 6418200 6419120
TU301141 False 888 lncRNA 0.39 1 6418233 6419120
TU301142 True 1094 lncRNA 0.39 1 6418233 6419326

Neighbor

gene id symbol gene type direction distance location
CI01000063_06384263_06390553 NA coding upstream 17172 6384109 ~ 6390590 (+)
CI01000063_06371168_06383580 NA coding upstream 23779 6370125 ~ 6383983 (+)
CI01000063_06358644_06359789 HOXB1B coding upstream 47647 6358319 ~ 6360115 (+)
CI01000063_06352595_06356492 NA coding upstream 50209 6352359 ~ 6357553 (+)
CI01000063_06347057_06348343 HOXB5B coding upstream 58722 6346637 ~ 6349040 (+)
CI01000063_06420629_06423287 NA coding downstream 1372 6420471 ~ 6423400 (+)
CI01000063_06426638_06427824 NA coding downstream 7333 6426432 ~ 6427865 (+)
CI01000063_06428760_06430410 ARL4D coding downstream 9345 6428444 ~ 6430783 (+)
CI01000063_06459591_06473697 DUSP3, DUSP3A coding downstream 39551 6458650 ~ 6473952 (+)
CI01000063_06491111_06495718 NA coding downstream 70631 6489730 ~ 6496295 (+)
G265463 NA non-coding upstream 68895 6338652 ~ 6338867 (+)
G265460 NA non-coding upstream 84138 6323277 ~ 6323624 (+)
G265334 NA non-coding upstream 133879 6270464 ~ 6273883 (+)
G265457 NA non-coding upstream 148495 6259057 ~ 6259267 (+)
G265456 NA non-coding upstream 148904 6258570 ~ 6258858 (+)
G266176 NA non-coding downstream 232718 6651817 ~ 6653969 (+)
G266294 NA non-coding downstream 602206 7021305 ~ 7021509 (+)
G266299 NA non-coding downstream 606948 7026047 ~ 7026289 (+)
CI01000063_07120937_07121851 CDK5R1B, CDK5R1 non-coding downstream 674178 7120602 ~ 7125013 (+)
G266208 NA non-coding downstream 695938 7115037 ~ 7117317 (+)
CI01000063_06335618_06338138 HOXB8B other upstream 70402 6335618 ~ 6338283 (+)
G265391 NA other upstream 488733 5913783 ~ 5919029 (+)
G262436 NA other upstream 3693245 2713615 ~ 2714517 (+)
G262423 NA other upstream 4164797 2241408 ~ 2242965 (+)
G262194 NA other upstream 5262755 1139352 ~ 1145007 (+)

Expression


Co-expression Network