G262211


Basic Information

Item Value
gene id G262211
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1196368 ~ 1198837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297644
GGAAATGGGGCATTGAATCAATATCACAACACACAAAAAAGAAAAAGTTCTGAGAAAAAAAAAAAAAAAAAAAAAGACTTTCCCCTACAAAATAACATGCTTGCAAAGGCATAACATGTACATGAACTTACAAGACTTAATAAAAAATGTTAAAAAAATCAGTATTTATTTAGTTAGGACCCAAGCATTTCTCTTCTATGGTGAAGAATGCTCACAAGTTTGAGACGATGTCCAGCTAAAGCCAATAAGCCAAAAATCAACTGTGCAGCTAGTACGAATGCTATCACCACACATTGCACTCATCTTTAACATGAGGAATAAACAATTTAAACTAAGTGTCTTTACATTGTTCTCCTTTAAACGTGTAAAAGGTGTGAAGGATAAGGAACACATCAGAATTTAAAATGACGAAATCATGATATTGTATAACAAAAACAGGCTAAAATTAATACATCCCAACCAAAACAATTTGGCAACTGGCAAATCTCACACTACTTCACTGTATTTTGAAATGAAATACGATTTGGTCATACGTCGTTTTTCTAATTAGGGGCTGCAATAAGTCAACTTTAAAATATACATTTGGGATTTCTTTTTACCTTTACAAGGCCCCAGACATAAGACCAATATGGTCAGAATATATCTATTCAAGAGCCTGTTTGGTGCTGTGCATTCTCTTGGAAACTCAAGTGTATGAATCCAGTTACAATTTAAAATAATAATTTAATCAAAGTCTAAAATTCTTATAAATAATGCCTCCTGTAAATATGCTGGTTTGCATTTTTAGAAACTTTAAGGATTAAAATTGATGCTGTAACAGAATCCTTTCATTTGGTTCTTCTGCCATATTTACAATGCGTCAATATAGACAAAACCACGAAGACATAACTTCACATCGGGGCAGGGGCTGAATGAACTCTCATCATATGATTGGTGCAGATCTGTCATTTGTGATGGTGGGTCGTAGTTTGACCGTGGCAAATGGATTCCCACCCCCAAGGAATGGAGCCACTGAGTGACCATTTGGCAAAGACACCTGTTGCAAACAGAAATAAGAATGAAAAGTGATCAGCATAAACGGTGCTTCCATTCTTAATAACTTGAAAGTGCGGAGCTGATTTTCCCTGTCAGACTGGTTCGATTAGGATGTCAGCACATGATTCAATCACTTCACCAGCCGACTAAGTACCTGGAACAATCGTTGTGTCCTATGACCTCATCATATGCGTAAAGAATCTCGATAATCTTGAAACGCTTGCTTTCTCTGCCTGAGTGCTGACAATCTAATCATAACTACTTCAAGAGAGGATGAACTGTAAACAGTCAGGGAAGGTACTTTATATGAGAGAAGGATGTACTGGGAGTATCCTAGAGTTAAAATTTTGATCCACTGACACATTTTGATCAAGGCAGGCCTTATTTCCTTATTTCATATTAAAGGAGTAGTTAACTCAAAAAAATGAACATTCTGTCATGATTTACTCCATGTATTTTTTCGCACACCATAGAAGTACTCCATATGATTAATTTTTCCGAGCAACAAGTTATAATGACCACAGGCTGTCAAACACCAAAAAACCCAAACAAAAACAACCAACAAACCAACCAAAAAAAAAAAAACTATATAAGTAATCCATATGCCTAATTTTTCTAAACAAATGCTTATATTGACCAACAGGCTATCAAACTTCAAAAAACAACAACAACAAAAAAATAGTCACAAGTCATTTTAAGTCACACCATGGTCTTGCAAAGCTGTGGGTCCCCAGGACCAGGATTGATAACCACTGAAGCAGAGTAAATGACAGAATTCCTATTTTTGGGTGAACTAACCATTTGTTCATCAAAGGACAGACTAGAGTTTACAGACCTGCCACAATAGTCCACATGTGTCTACCAGAGTCACCAGCCCACCATCATATGATCACATTCAAGGTGAATTAGTTGTGTCTAAACACTTTCAATTGGATCTCTGTGCCCTGATGCAGCACATGTATCTTGAGGTCTTTCAGGAGAGGGAGCCAGATACTCGCATACAGTTTGCCATCAGTTAATATAGTGCAGCTCTAATAGTCTCCACTATCCCTTGCAATGAGAAAACCAGGTAGGGAGCATTTTTCAGATGTCTTTTTATTTTTCACAATGATAGCAATGCAGAGCATTCATCTACCCCTCCCTAGGCCCCCTGGCAAAGAACAAAGGTTACATTACTGTAGTACGTAAGTGATTCTTGCCACTTATTGATTTAAAGGAACACTCCACTTTTTTTTGAAAATAGGCTCATTTTCCAACTCCCCTAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297644 True 2302 lncRNA 0.37 3 1196368 1198837

Neighbor

gene id symbol gene type direction distance location
CI01000063_01168018_01168572 BHLHA15 coding upstream 26977 1165782 ~ 1169391 (+)
CI01000063_01095386_01102295 NA coding upstream 94073 1095386 ~ 1102295 (+)
CI01000063_01089059_01094639 PMS2 coding upstream 101346 1089059 ~ 1095022 (+)
CI01000063_01047868_01059684 CYTH3, CYTH3A coding upstream 136643 1047868 ~ 1059725 (+)
CI01000063_01008945_01013177 ATAD1, ATAD1B coding upstream 182819 1008945 ~ 1013549 (+)
CI01000063_01219046_01224170 NA coding downstream 20063 1218900 ~ 1225323 (+)
CI01000063_01240976_01328455 TRRAP coding downstream 40545 1239382 ~ 1328688 (+)
CI01000063_01384163_01441190 FAM20CB, FAM20C coding downstream 184361 1383198 ~ 1441349 (+)
CI01000063_01456382_01458080 NA coding downstream 257254 1456091 ~ 1459374 (+)
CI01000063_01500129_01504142 NA coding downstream 301200 1500037 ~ 1504470 (+)
G262194 NA non-coding upstream 51361 1139352 ~ 1145007 (+)
G262191 NA non-coding upstream 60850 1132990 ~ 1135518 (+)
G262189 NA non-coding upstream 76492 1118933 ~ 1119876 (+)
G262185 NA non-coding upstream 95014 1101147 ~ 1101354 (+)
G262174 NA non-coding upstream 218354 977802 ~ 978014 (+)
G262266 NA non-coding downstream 310442 1509279 ~ 1509628 (+)
CI01000063_01533946_01534527 MSRB1B non-coding downstream 335016 1533853 ~ 1535375 (+)
G262101 NA non-coding downstream 456365 1655202 ~ 1656049 (+)
G262104 NA non-coding downstream 483382 1682219 ~ 1686364 (+)
G262314 NA non-coding downstream 538961 1737798 ~ 1738321 (+)
G262060 NA other upstream 485814 710110 ~ 710554 (+)
G261984 NA other upstream 528986 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 638034 533801 ~ 558334 (+)
G261700 NA other upstream 921918 252412 ~ 274450 (+)
G262423 NA other downstream 1042571 2241408 ~ 2242965 (+)
G262436 NA other downstream 1514778 2713615 ~ 2714517 (+)
G265391 NA other downstream 4714946 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 5136441 6335618 ~ 6338283 (+)

Expression


Co-expression Network