G262104


Basic Information

Item Value
gene id G262104
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1682219 ~ 1686364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297511
GTTTTATTGAATATTCCATTGCATTACATGTAGATAAAGTCACGCGTACATTGCAAAACATTTATTATTAAATTATTAAGGATAAAGTATGCAGAACCATTCCATCCTTCTTCGGAGGCTCTTCATCGGAACTTCTCAGCTAAAACAGCTGAGAATGCCGATAGAAACTTGTCTATCGCCGCGTGTGCAACTGGTGTGAAGTTGTCACCCATATGGCAGGCTAACGTCACAATGATGCAATGATTGAAAAGCTGGAAAATATAAGAAGTTTTCGTTAGTGATTTAAATGAAAAATATCACATCACATAATATCACGTATTTGGAAAGAGCCTGTTGATGTGTACTGGATCAGTTCAACGCTAACACCTTGAAGTTTGTAGGATGTATTCGCAGTTGATAGGCATGGAACCTGCTTAGTGGTGCCAACGTAGTAGCAAGTGTGCTTATGTTCCTCGCACCGTCGGCTAAAGCCTGGACGATTTTCTTCCCGTGGCAGCGCAAATGCTCGGAACTGGGGCTGATATCTAGATGAGAGAAGTATGTCTTTGTTTTGGGGAACGTTGTGAACATCCTGTAAACCAGTTAACAAGGGAGAAAACAAGGTCAGCATGACAAGCACAAGACCCCTATCCCCTCCCTGTTGCTTGCGTCATCGCTCATGGGAAACTGCCAAAAATGACAAGACCATTAATCATTGAAGAGACTTTTGATATTCAGAAAATTGAACTGCGAACTATCAAGGATCCACCAAAGAGCGGAGGGGCCATGGCATTGAATCTGATAAACCGTCATGGCTGCCCCTATCAGTAGCTCAAGCTGCAGGCTGAAAGTGGGTGGAAGTTGAAGAGCAGCGTAATCACCAATCTCACTCCTGCCTTGCCCTCCTGCCAGCACTATGGCAGCATCAACTACCCATGACTCAGCTAAACTGAAGGACTACCTCTTTAATAGAATCCACATCTTTTTGCATTTTGTGAAATGTGCAATATCAGTGATCAGGTCTATTCTTGTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTTTAAACTTATTTAGAGTTGAAAGCTTCATTCTATATTCTATTTTTTTCTAATAATGTTTTTTTTTTTTTTGTAATAATTTATTCTGTATTTATCATTGCTTAGTTCCAACCCTTTATGTGTATAGGTTTATTTAATGACATATTTATTTATTTAATGTTTTATTTGTATAGGGACAGATACAATAACTGGGACAACAGCCATCCAATGCATGTATCATAGTGCTTGTAGCTGCTAATTTGCAACACTTGTCCCTAGAAGGGCTTTTATAAATTCCAGTTACAACAACAAACTAATAATAATAATAATAATAATAATAATAATAATAATAAAGGGGAAAAAACTAAACATGAGTACAAGTTTGTTGCTGAATTAACCAAGACATAGTAGCTTTTTAAAAAAATATTAAAACTTGCAGCATATTTTAAATAATCAGGTAATGAGTTCCAAATTTTTTCACCTTTCACTGAGAGGGCAGTCTGAGCAAAGGATGTTTTACAAAACAAAATTTTACAATTTCCACTAAAAGTTGCTCTTGTGGATCTGCTGCACCCCTGCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAAAAAAAAAATATATATATAAGGGCTGAGGGGCAAGACCATTTAAACATTTAAACACAAACTTTGCATAGTGAAAAAAGACAAAGTGAGCAAAGCTTAAAATCATATATTTACTTAAGATCTGACAATGATGGGATCTTATTTGCTTTCTATCTAAGATTTTCAAGGCTCTGTTGTAGAGACATTCAATCTGATTAATTACAGACTGATTTGTCTAAGAACCAAATCCATAGGACATGTGTGATAATATCGAGTATAAAAACAGAAGGGCATGATCATATGTTAAACAATTTCTTATTAATTTGAAGCTTGTAAGATTTGCTTTAATCGTTTTACATATATATTTTTAAAATTTAACTGAGAATCTAAAATCATGCCAAGATATTTTTCCTCTGATATTTGTTCAATAAAGCCATCTTTAATTCAAATGTTTAAGGATTCTGTTGCAGGTAATTTTTTTTTATTGAAAAACATATAGACTTTTTAGTATTTAAACAAGAGGCATCAAGAAAAGCTGACACTTTTTCTAGGTTTCTTGTTAACTTTTTTTCAAACTCCACACAATTTTTACCATCCAAATAACTGTGTCAGCAGCATACATTTGAAGCCTCACATCAAGACATATTTCTGGAAGGTCATTAATATAAATACTAAAAAGAATAGGACCTAAGATGGTTCCCTGAGGGATTACTATTTCGATCTTATGAGAGAATGACTTAATATTATTAATGACAACACTTTGTTCACAATTTTTAAATATGAATCAAACCATATCAGAGATCATTTCGATGTATTATACTTTGACATTTCTGCCATTAAAATATTATGATTTACAGTATCAAATGCCTTTTTTAAATCCAGGAATAGTGCACCAACTATAAGTCCTTTATCAAGTGACCACATAATATTTTCCATTAACAAACAAGTGTGTAGTAATTGTGTCTAAAAACAAACTGTAAAGGGTGTAAATGTTTATTTATCTCTAAATGATGCAATAATTGCTCTGACACAACCTTCTCCAGCACTTTGGAGAGAACTGGAAAAAGACTAATTGGTTTTCCGAGCTTCAACTCGGCAGCTGAACTAAACTCTCTCCAGTGCCAGTGAGCCCTCCCTTTAAATGTTTATGTTTTGTTTAATTTTGTGTCTGTTTCAGTGTGGAAACAGCTCCGTTCTCACAACCTCAAGTGATATATCATTATCATCAATGTGTTATAAAATGTTAGTGTTAAATAAACATCAATTAAAAAAGGGTCTGATCACTTTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297511 True 2918 lncRNA 0.35 2 1682219 1686364

Neighbor

gene id symbol gene type direction distance location
CI01000063_01675750_01678399 HBBE3 coding upstream 3761 1675501 ~ 1678458 (+)
CI01000063_01672649_01673337 HBBE2 coding upstream 8834 1672574 ~ 1673385 (+)
CI01000063_01662111_01665744 AQP8A.2, AQP8, AQP8A.1 coding upstream 16475 1662111 ~ 1665744 (+)
CI01000063_01658882_01660951 AQP8A.1 coding upstream 21077 1658882 ~ 1661142 (+)
CI01000063_01643090_01644021 NA coding upstream 37782 1642653 ~ 1644437 (+)
CI01000063_01692878_01697954 NA coding downstream 6030 1692394 ~ 1698078 (+)
CI01000063_01739754_01764028 RHBDF1B, RHBDF1, RHBDF1A coding downstream 52880 1739244 ~ 1764772 (+)
CI01000063_01784971_01788682 NA coding downstream 98607 1784971 ~ 1788898 (+)
CI01000063_01824468_01849446 NA coding downstream 136490 1822854 ~ 1849454 (+)
CI01000063_01950136_01991996 SHISA9A coding downstream 261810 1948174 ~ 1992128 (+)
G262101 NA non-coding upstream 26170 1655202 ~ 1656049 (+)
CI01000063_01533946_01534527 MSRB1B non-coding upstream 146844 1533853 ~ 1535375 (+)
G262266 NA non-coding upstream 172591 1509279 ~ 1509628 (+)
G262211 NA non-coding upstream 483382 1196368 ~ 1198837 (+)
G262194 NA non-coding upstream 537212 1139352 ~ 1145007 (+)
G262314 NA non-coding downstream 51434 1737798 ~ 1738321 (+)
G262333 NA non-coding downstream 119600 1805964 ~ 1806185 (+)
G262122 NA non-coding downstream 125144 1811508 ~ 1813486 (+)
G262098 NA non-coding downstream 163992 1850356 ~ 1854092 (+)
G262511 NA non-coding downstream 314498 2000862 ~ 2001064 (+)
G262060 NA other upstream 971665 710110 ~ 710554 (+)
G261984 NA other upstream 1014837 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1123885 533801 ~ 558334 (+)
G261700 NA other upstream 1407769 252412 ~ 274450 (+)
G262423 NA other downstream 555044 2241408 ~ 2242965 (+)
G262436 NA other downstream 1027251 2713615 ~ 2714517 (+)
G265391 NA other downstream 4227419 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4648914 6335618 ~ 6338283 (+)

Expression


Co-expression Network